Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11 122 1e-22 seq2 84.2 3e-11 seq5 82.4 1e-10 >seq11 Length=923120 Score = 122 bits (134), Expect = 1e-22 Identities = 439/678 (65%), Gaps = 9/678 (1%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| |||| ||||||||||| |||||||||| ||||| ||||||| || || Sbjct 449339 GTAAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGA 449280 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TCTCCTTGATGCGTT 110825 ||||||||||| ||||| | | ||| || | | || | | | ||| || || Sbjct 449279 AGCTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTT-ATTTTTT 449221 Query 110826 CCTTGAGAACATCCCAGTC---GTAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAAC 110881 || | | |||||| || || || | | ||| | || |||||| ||||| Sbjct 449220 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATT-CCACATATCAAAT 449162 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || | | |||||| || ||| ||||| | | | |||||| | ||| || ||| Sbjct 449161 TGTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGT 449102 Query 110942 GCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || ||||| |||| | || | | || | |||||| || ||||| || | ||| Sbjct 449101 GCTAATTCAACAG-ACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 449043 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 449042 TAATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 448983 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 ||||| || || | |||||||||| || | |||| || ||| || | || Sbjct 448982 TCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAAT 448923 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || ||| ||||||| ||||| | | | || |||| | |||| ||| || || || || Sbjct 448922 TGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 448863 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 || | ||||| | ||| ||| | ||| || ||| | || | || || Sbjct 448862 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 448803 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 ||| |||||||| |||||||| ||||| ||||| || | ||||| ||| Sbjct 448802 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACA 448743 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||| || ||||| || || ||||| ||||| ||| || ||||| ||||| Sbjct 448742 TAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATC 448683 Query 111361 CTTGTAGAGCATGTAGGG 111378 || || | ||| || || Sbjct 448682 TTTATATAACATATATGG 448665 >seq2 Length=1580255 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 182481 AGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCA 182540 ||||||||||| || | || |||||||| | | | ||||||||||||||| |||||| Sbjct 484991 AGACTGGGCCAAAATTTATGAATCATATTAATTAATAAACCCTTGATGTGAGATCCATCA 484932 Query 182541 TTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTG 182596 | ||| ||| ||||||||||| | | |||||| | |||| | || |||||| Sbjct 484931 TAATCCTGATCCGTCATAATCATTAAAGAACCATATCTAAGTCCTTTAATATCTTG 484876 >seq5 Length=2497646 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/202 (69%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGT---TGATTTTCGCGGGCGATT 11680 || || ||||| || |||||||| || ||||| || ||| || |||| ||| || Sbjct 1118799 CCAACTGCATCTATTTCATCAATAAAAACAATGCAAGGTGCATGCTTTTTT---GCGGTT 1118855 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | ||| || || | | ||| | |||||||||||||||||||| || |||| | || Sbjct 1118856 TGAAAAAGCTCTCTTATTCTTCTTGCACCCACACCAACAAACATTTCTTCAAATTCTGAA 1118915 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 |||| ||||| || || ||||||| ||| || || || || | || | | || Sbjct 1118916 CCAGATGCTTGGATAAAAGGTACATTTGCTTCTCCTGCAATAGCCCTAGCAATTAATGTT 1118975 Query 11801 TTTCCCGTACCTGGCTTACCCG 11822 ||||| || || || | ||||| Sbjct 1118976 TTTCCTGTTCCAGGTTCACCCG 1118997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028247508800