Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 138 1e-27 >seq11 Length=923120 Score = 138 bits (152), Expect = 1e-27 Identities = 607/960 (63%), Gaps = 3/960 (0%) Strand=Plus/Plus Query 104480 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 104539 || ||| | |||| | || ||| |||| | || || |||||| |||| ||||| | Sbjct 448215 CAAGATATAAGAGGTCAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 448274 Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC-- 104597 |||||||| | | || ||||| | || || | |||||| |||||| ||| | Sbjct 448275 GTTCCAATGTTAAGGGTTTTTAATGATACGGCAAGGTATGTAGATCAAGGTGGAGGGAAA 448334 Query 104598 -GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 |||| |||||| | ||||| ||| | ||||||||||| | ||||| | || || | Sbjct 448335 AGAAAAGGATCTTTTGCAGTATATATAGAGCCATGGCATTCAGATATTTTTGAATTTTTA 448394 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || | || || ||| | || || | || ||| | || | ||| | Sbjct 448395 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTCGAGATTTATTTTATGCTATT 448454 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 ||| | || ||| | || ||||| ||||| | || | | || ||| || | | ||| Sbjct 448455 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAAAAACTGGACTTTAATGTGT 448514 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || | | || ||| | || | ||| || || |||||| | || ||| Sbjct 448515 CCTAATGAATGTCCAGGTTTAAGTGAATCTTGGGGAGACGAATTTGAAAAGTTATATACA 448574 Query 104837 AAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 104896 || || || |||||| | | | || || | || ||| | ||| ||| Sbjct 448575 AAATATGAAGAAGAAAATTTAGGAAAAAAAACAGTCCTTGCACAAGATTTATGGTTTGCT 448634 Query 104897 ATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 || | | ||||| || |||||| |||||| ||| | || ||||| || || || Sbjct 448635 ATATTACAAAGTCAAATTGAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAAT 448694 Query 104957 CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATC 105016 || ||||||||| ||||| || || || || || | ||| ||||| Sbjct 448695 TCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATA 448754 Query 105017 TTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 105076 | |||| || ||||| ||||| ||||| | || ||||| || | Sbjct 448755 ATTGAATACACCTCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGT 448814 Query 105077 AAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAA 105136 || | ||| ||| ||| | ||| |||| ||| | ||||| | | || |||| ||| Sbjct 448815 AAATTTGTTGATAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAA 448874 Query 105137 ACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCT 105196 | | | || | ||| || | | | ||||||| ||||||| |||||| || | ||| Sbjct 448875 ATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCT 448934 Query 105197 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTA 105256 ||||| |||| || || || || ||||| | || || || || | || ||| | Sbjct 448935 GAAAAATCAAATAAAAGGCATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACA 448994 Query 105257 TTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATA 105316 || || |||| | | ||| ||| || |||||||| || ||| | ||| | ||| Sbjct 448995 TTTATGCTTTTAAGATATCCATATGAATCTGACGAAGCTAAAGAATTAAATAAAAGAATA 449054 Query 105317 TTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGT 105376 |||||||| |||||| | || ||| | || | | || || ||| | || ||||| Sbjct 449055 TTTGAGACAATGTATTATGCGGCTTTAGAAATGTCTGTTGAATTAGCACAAGTACATGGT 449114 Query 105377 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||||||||| | | | ||||| |||||| ||||| | | ||||||||||||||| Sbjct 449115 CCATATGAATCATATAAGGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGTGG 449174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257315016720