Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 3e-14 >seq12 Length=816096 Score = 93.3 bits (102), Expect = 3e-14 Identities = 224/333 (67%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 ||||| ||||| ||||| | || | || |||||| || ||||| || || || || Sbjct 648062 TGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACCCCAAGCCCT 648003 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGA 111906 | ||| | ||||||||||| | |||||||| ||| | | |||||||||||| Sbjct 648002 AAATCACAAGATCTTTGATACATAATACATGATAATTTTCCGTCAAAAACATAAAATTGA 647943 Query 111907 CAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCATGCACAC 111963 || | | |||||||||||| |||||||| || | | | | |||||||||| Sbjct 647942 CATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACAC 647883 Query 111964 ATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTG 112022 | || || | ||| | |||| ||| || || ||| | ||| | ||| | || Sbjct 647882 AAAATAATTCGTCTACAAGTAG-GATCATTTTTAATTAAATTTATAATATTTTTTAATTG 647824 Query 112023 GTCTATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTT--GCCCCATAGTG 112079 || | ||||| | |||||| | || | ||| ||||| || || ||| | || Sbjct 647823 ATCAACTCCTTTGTCTTTATAATTATCATGCATATC---TGTATATTCAGCACCAAAATG 647767 Query 112080 TCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 |||||||| ||||||||||| || || ||||| Sbjct 647766 CCTCCATTGAAATCCATAAATTGGACCGAGATC 647734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391943316671914