Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq2 111 7e-20 >seq2 Length=1580255 Score = 111 bits (122), Expect = 7e-20 Identities = 330/503 (66%), Gaps = 11/503 (2%) Strand=Plus/Minus Query 64890 ATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAA 64949 |||| || || || || | ||||||||| || |||| | ||||||| |||| |||| Sbjct 485842 ATCCAGTTCCTATTCCTTCACAGCCATTTACTAGAATCGTAGGAATAACTGGTATATAAT 485783 Query 64950 AGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTT 65009 | || || | | | || || |||| ||||| || ||||| | |||||| | || Sbjct 485782 ATTGTGGTTCTATTTTTTGTCCCTCTTCATTTAAATATTTTAAAATCGGATCATCATATT 485723 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCAA-TTGAGTATAAATATATCT---TTCGGAT 65065 ||||||| | ||| | || ||| || ||| | |||||||| | | ||| Sbjct 485722 CATTAAATATACTTCTAGTGGATG-ATGCAAGTTTTGTAAATATATATCTAGCTGCAGAT 485664 Query 65066 GCGTGGTCTTGTCCAG-TTCGT--CGTGTTCCAAACTGACCATTTGGCATTAATAAATTA 65122 || | ||| ||| ||| | | | ||||| || || ||| ||| ||||| Sbjct 485663 GCAT---CTTTACCACCTTCTTTTCTACTACCAAATTGTCCGCATGGTTCTAAAAAATTT 485607 Query 65123 ATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCT 65182 || || |||||||||| ||| | |||||||| ||||| | | | ||| | Sbjct 485606 ATGTTATTTGAACCAACAAATGTTTGAGCCATATTTATAATAGTTTGTTGTAATGATGAC 485547 Query 65183 TCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATT 65242 || || ||||||||| | |||||| | | ||| || || |||||||||||| | Sbjct 485546 TCTCCATGATGATATGCACTATGTTCTGCAATATAACCTACAAGTTGAGCAACTTTACAT 485487 Query 65243 TCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAAT 65302 || || ||||||| ||||||| | ||| || | ||| | | | |||| || Sbjct 485486 TCATTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGTCCGGGTTTCCAT 485427 Query 65303 CCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCT 65362 |||||||| | ||| || || ||||| || |||||| | || ||| || |||||| Sbjct 485426 CCATCCATAATATTCGGTATACTTCTTTCTGTGTCATATCTAGAATAATAAATTAATTCT 485367 Query 65363 TTGTTAATAAATTCTTCATATGA 65385 || || | ||| || | |||||| Sbjct 485366 TTATTTACAAAATCATAATATGA 485344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678627016700