Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 6e-16 >seq11 Length=923120 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||| | || || |||||||| |||||||| || | ||||| | ||| Sbjct 406255 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 406196 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||| ||||| | ||||| || || || | || || || ||| Sbjct 406195 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 406136 Query 34615 GTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| |||||| | ||| || || || || || | ||||| || Sbjct 406135 -TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGT 406077 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || ||||| ||||| |||||||||||||| Sbjct 406076 TTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||| | || || |||||||| |||||||| || | ||||| | ||| Sbjct 406483 AAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCT 406424 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||| ||||| | ||||| || || || | || || || ||| Sbjct 406423 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCT 406364 Query 34615 GTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| |||||| | ||| || || || || || | ||||| || Sbjct 406363 -TGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGT 406305 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || ||||| ||||| |||||||||||||| Sbjct 406304 TTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727766503374