Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 154 1e-32 seq3 138 1e-27 >seq11 Length=923120 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| | || || || | || |||||||| || ||||| ||| Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||| |||||||| || || || |||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||| ||||| | || | || ||||| || Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||||||||||||||||| | || | ||||| || Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGGTAT 406273 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| | || || || | || |||||||| || ||||| ||| Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||| |||||||| || || || |||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||| ||||| | || | || ||||| || Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| || || ||||||||||||||||| Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTT 406483 Score = 132 bits (146), Expect = 4e-26 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| |||||||| || ||||| ||||| | ||||| | || ||| ||||||||||| Sbjct 405850 CTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAG 405909 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 | |||||||| || || || |||||||| | ||||| | || || |||||||| |||| Sbjct 405910 ATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAG 405969 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201 | | || | || ||||| || |||||||| || || ||||||||||||||||| Sbjct 405970 ATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATTTGGTTTTAA 406029 Query 27202 GTTTGCGGGGTGGCAT 27217 | || | ||||| || Sbjct 406030 GATTAAGAGGTGGTAT 406045 >seq3 Length=1724855 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | ||||| || | || |||||||| || ||||| ||| Sbjct 1545578 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 1545519 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||| |||||||| || || || || ||| Sbjct 1545518 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAA 1545459 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | |||| | || || |||||||| ||||| | || | || ||||| || Sbjct 1545458 CAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTATAAT 1545399 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| || || |||||||||||||| Sbjct 1545398 ATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915801362560