Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 >seq5 Length=2497646 Score = 102 bits (112), Expect = 1e-16 Identities = 273/407 (67%), Gaps = 19/407 (5%) Strand=Plus/Minus Query 136368 AAACTGGCAACATCAGGAAAGGGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGG 136427 ||||| | | || ||||||||||||| | |||| |||||||| ||| | || | | Sbjct 393998 AAACTTGTAGCAGCAGGAAAGGGAATTTTAGCTGCAGATGAATCAACACAAACAATTAAG 393939 Query 136428 AAAAGATTGGCTAGTATTGGAGTAGAAAATACAGAGGCAAATAGA-CAGGCATACAGAGG 136486 |||||||| | || ||| | | || || || | | ||||||| | || || |||| Sbjct 393938 AAAAGATTTGATAATATAAAAATCGAGAACACTGTTGAAAATAGAGCTAGC-TATAGAGA 393880 Query 136487 TATGTTATTTACCACAGAGGGATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGA 136546 | |||||||| || | |||||||| || | ||| |||||| || ||||||||||| Sbjct 393879 TTTGTTATTTGGAACTAAAGGATTAGGAAAATTCATTTCTGGTGCAATTTTATTTGAAGA 393820 Query 136547 AACACTATTTCAAGATCATGCTGATGGAGAAAGCATGATTGCAAA---GTTAGAGAAGCA 136603 ||| |||||||| | ||| | ||| | | ||| | | ||| ||| | | | Sbjct 393819 AACTTTATTTCAAAAAAATGAAGCTGGTG-TACCAT--TAGTAAATTTATTACATGATGA 393763 Query 136604 AGGAATTATACCAGGTATCAAGGTAGATAAAGGATTAAAACCATTAGT---TGGTGCATT 136660 ||| || |||||||| || || || || ||||| ||| ||||| |||| | Sbjct 393762 AGGTATAATACCAGGAATTAAAGTTGACAAAGGTTTA-----GTTAGTATCCCATGCACT 393708 Query 136661 AGAGCATGAGACATATTGTTCTGGATTAGATGGTCTAACAGA-AAGAGCAAGTGACTATT 136719 || |||| | || || || || || || |||| | | |||| || |||| Sbjct 393707 -GATGATGAAAAATCAACCCAAGGTTTGGACGGATTAGCAGAGAGGTGCAA-AGAATATT 393650 Query 136720 ATGGTAGAGGTGCAAGATTTGCTAAGTGGAGAGCAGTTCTACAAATT 136766 || |||||||||||||| || |||||||||||| || |||| Sbjct 393649 ATAAAGCTGGTGCAAGATTTGCAAAATGGAGAGCAGTTTTAGTAATT 393603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631423427222480