Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 1e-14 >seq12 Length=816096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 126075 TCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTC- 126133 || |||||||| ||||| ||| |||| || ||| ||| || |||||| | ||| Sbjct 648134 TCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGCCTGT 648075 Query 126134 AAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGG 126193 |||| |||| ||| ||| | | || ||| | || || ||| ||||||||||| || Sbjct 648074 AAGTT-ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGG 648016 Query 126194 AACACCTAAAAATATATCAGCACTTCTTTGATA--TAATTGACAATTTAATTTACCCTCT 126251 ||| || | || |||| | ||||||||| |||| ||| |||||| || || Sbjct 648015 AACCCCAAGCCCTAAATCACAAGATCTTTGATACATAAT--ACATGATAATTTTCCGTCA 647958 Query 126252 TGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTA 126311 || ||||||||| | | | || ||||| |||||||||||| ||| | || | Sbjct 647957 AAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTT 647898 Query 126312 GGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATA 126371 ||||||||| | | ||| |||| | | | |||| |||||||| | |||| Sbjct 647897 ACATTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATA 647838 Query 126372 ACTGATTTTAATTGATC 126388 | |||||||||||| Sbjct 647837 ATATTTTTTAATTGATC 647821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408596019658946