Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 147 1e-30 >seq11 Length=923120 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | ||||||| || ||||||||| | || || ||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGC-AAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCA 406390 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || ||| ||||| || Sbjct 406391 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 406450 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || |||||||| |||||||| || ||||||| Sbjct 406451 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGG 406498 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | ||||||| || ||||||||| | || || ||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGC-AAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCA 406162 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || ||| ||||| || Sbjct 406163 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 406222 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || |||||||| |||||||| || |||| || Sbjct 406223 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGG 406270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007630882824