Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 140 8e-28 seq11 116 9e-21 seq284 87.8 4e-12 seq8 84.2 5e-11 >seq3 Length=1724855 Score = 140 bits (154), Expect = 8e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | |||||||| |||||||||| || || ||| Sbjct 1545382 GTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1545441 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || |||| ||||||||| || ||||| ||||| || ||||| || |||||| || Sbjct 1545442 GCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGAAT-TTTTGCTTT 1545500 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | ||||| || || || || || || Sbjct 1545501 AACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1545560 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||||| || | ||||||||| Sbjct 1545561 TTTTACAAAGATTTGCATTTT 1545581 >seq11 Length=923120 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | || ||||| |||||||||| || || ||| Sbjct 406240 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 406181 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || |||||| || || ||||||||||| || ||||| || |||||| || Sbjct 406180 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAAT-TTTTGCTTT 406122 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | || || || || || || || || Sbjct 406121 AACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGT 406062 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | ||||| Sbjct 406061 TTTTACAAAAATCTGCAT 406044 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | || ||||| |||||||||| || || ||| Sbjct 406468 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 406409 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || |||||| || || ||||||||||| || ||||| || |||||| || Sbjct 406408 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAAT-TTTTGCTTT 406350 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | || || || || || || || || Sbjct 406349 AACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGT 406290 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | ||||| Sbjct 406289 TTTTACAAAAATCTGCAT 406272 Score = 104 bits (114), Expect = 6e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | || ||||| |||||||||| || || ||| Sbjct 406012 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 405953 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || |||||| || || ||||||||||| || ||||| || |||||| || Sbjct 405952 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAAT-TTTTGCTTT 405894 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| ||| || || || || | ||| || || | || || || || || Sbjct 405893 AACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATAGTTTTTCC 405843 >seq284 Length=5998 Score = 87.8 bits (96), Expect = 4e-12 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||||||||||||| ||||||||||||||||| | ||||| || ||| || Sbjct 3166 ATACTTCTGGATGACCAAAAAACCAGAATAAATGTTGATATAATATAGGGTCTCCTGCGA 3107 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||||||||| |||||||||| | ||| | ||| |||| Sbjct 3106 AAGTTGGATCAAAAAATAATGTATTAAAATGTAAATCTGATAATAACA 3059 >seq8 Length=590521 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||| ||||||||||| || |||||||| ||||| ||||| ||||| |||||| Sbjct 485660 AATATTTGTCCATCAGTAATTGAAATAACATTAGTAGGAATATATGCAGATACATCATTA 485601 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561 | |||||| | |||||| || ||||||| Sbjct 485600 TTTAATGTTTCAATAACAGGCAATGCTGTTA 485570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523896491732