Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 seq3 109 4e-19 >seq11 Length=923120 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| |||| || || |||||||||||||||||||| ||||| | Sbjct 406270 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406211 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||| |||||||| || ||| | || | |||||||| || ||| Sbjct 406210 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406151 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | |||||||| || ||||||| ||| |||| | | || || ||| || | Sbjct 406150 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATC---GGA---TGGT 406097 Query 101192 TCGAC------GGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| || || ||||| || || |||||||| | |||||| ||||| Sbjct 406096 TCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| |||| || || |||||||||||||||||||| ||||| | Sbjct 406498 CCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406439 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||| |||||||| || ||| | || | |||||||| || ||| Sbjct 406438 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406379 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | |||||||| || ||||||| ||| |||| | | || || ||| || | Sbjct 406378 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATC---GGA---TGGT 406325 Query 101192 TCGAC------GGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| || || ||||| || || |||||||| | |||||| ||||| Sbjct 406324 TCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| |||| || || |||||||||||||||||||| ||||| | Sbjct 406042 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 405983 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||| |||||||| || ||| | || | |||||||| || ||| Sbjct 405982 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 405923 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | |||||||| || ||||||| ||| |||| Sbjct 405922 ATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 405889 >seq3 Length=1724855 Score = 109 bits (120), Expect = 4e-19 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| || || |||||||||||||||||||| ||||| | | |||| || |||||| Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCT 1545429 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 |||||||| || ||| | || || ||||||||||| ||| | |||||||| || | Sbjct 1545430 AATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGA 1545489 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT-----TCGACGGTAATAG 101204 |||||| ||| |||| | | || || ||| | ||| || | || || | Sbjct 1545490 ATTTTTGCTTTAACATTTTCAATAGTATC---GGA--TGGTTCAACATCAAGAGTGATTG 1545544 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 |||| || || |||||||| | ||| ||||||||| Sbjct 1545545 TTTTTCCGGTTAATGTTTTTACAAAGATTTGCATT 1545579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409658413469802