Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 228 7e-55 >seq2 Length=1580255 Score = 228 bits (252), Expect = 7e-55 Identities = 586/877 (67%), Gaps = 29/877 (3%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| | ||||| || || | |||| ||||| |||||||| ||||| |||| ||| Sbjct 1448318 AACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1448259 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| ||| ||| ||||| | | | || ||| |||| || Sbjct 1448258 AGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAA 1448199 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | || |||| ||||| |||||||| ||||| || ||| ||| | || || Sbjct 1448198 ACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCAT 1448139 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 1448138 TCCAATTAAA-TCACATGGTAAAG---AT-TCACAAATAAATGATCTCTCTACTTCAACT 1448084 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | |||| | | ||||||| |||| | | | | Sbjct 1448083 GCTTCTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATAA 1448024 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | ||| || ||||||| ||| | |||||| ||||||||||| | ||| ||| ||| Sbjct 1448023 ATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAAT 1447964 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| |||||| || || ||| ||| | Sbjct 1447963 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTA 1447904 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| |||||||| ||| || || | || | || || | | | Sbjct 1447903 AATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTG---TA 1447847 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATAT 4780 || ||||||||||| ||||| ||||| ||| ||| || || || | | || Sbjct 1447846 TCATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCT-GGTATATTTTCAAT 1447788 Query 4781 AGCGTTAAATAA-TTTA--CTTT---TTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 ||| | ||||| |||| |||| ||||| |||| ||||||| | || |||| Sbjct 1447787 AGCATGGAATAAATTTAACCTTTCTTTTTCA------TCTTTAATATAATTATCGATTAA 1447734 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 || ||||| ||||||||||||||||||| | ||| || ||||| ||||| | | Sbjct 1447733 TAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTT 1447674 Query 4895 AGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATAC 4953 ||||| ||| || ||||| | ||||| || ||| | || ||||| |||||| | Sbjct 1447673 TGCTTCAATTATTTCTACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTC 1447615 Query 4954 CGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA 5013 | ||||| ||||||||||| || |||||||| |||||| | | ||| | || | Sbjct 1447614 CATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTA 1447555 Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 ||||| | | |||||| | | |||||||| ||||||| | |||||||| || | Sbjct 1447554 ATTTTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAG 1447495 Query 5074 CTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 |||| ||||||||||| | | ||||| |||||||| Sbjct 1447494 CTTCAGCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1447458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047112169174