Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 522 4e-143 seq2 212 9e-50 >seq11 Length=923120 Score = 522 bits (578), Expect = 4e-143 Identities = 1149/1699 (68%), Gaps = 40/1699 (2%) Strand=Plus/Minus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||||| | || | ||||| ||||| | ||||| ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGA-ACC 77041 |||| |||||| | | || ||| | || | || | | || | | | |||| || Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 449457 Query 77042 ACCATC-TGATA---TAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 |||| ||| ||||||| | || ||||| |||| |||||| ||||| | | Sbjct 449456 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAA--CCTCTATCAAA 449400 Query 77098 AAACTCTA--AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGT 77155 || ||| | | ||||||||| || | ||||| ||| ||||| | | | Sbjct 449399 AAGATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATA 449340 Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 |||||| ||||| ||||||||||| | ||||||||| |||||||||||||| | ||| || Sbjct 449339 GTAAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGA 449280 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACT--ATTTCTGAGACCATGTGTTCTGATTTTA 77273 ||| |||||||||||||| | || || | |||||| | |||||| | || ||||| Sbjct 449279 AGCTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTT 449222 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTAT 77330 | ||||| | | |||||||||| | | ||| ||| ||| | ||| || Sbjct 449221 TTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAAT 449162 Query 77331 TGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA 77390 |||| ||||| | || || || ||||||| |||||| || || | | || Sbjct 449161 TGTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGT 449102 Query 77391 GCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTG 77450 |||| |||| | | ||| || || | ||||| ||||| || || || | ||||| Sbjct 449101 GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTT 449042 Query 77451 AGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAAT 77510 | |||| ||||| | ||| | ||||| |||||| ||||| | |||||||||| Sbjct 449041 AATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 448982 Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATA 77570 || || ||||| || |||||||||| ||| || ||||| || ||| ||||||| ||| Sbjct 448981 CCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATT 448922 Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630 || |||||||| | || |||||||||| | ||||||| || | |||| | || Sbjct 448921 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCA 448862 Query 77631 TTTAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATA 77684 | || ||| ||||| ||| | || ||||| |||||| | || || || Sbjct 448861 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATT 448802 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 || || | ||||||||| ||||| |||| || || |||| ||||| || |||| Sbjct 448801 GAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACAT 448742 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 | ||||||||||| || || || | ||||| ||| || || |||||||| || Sbjct 448741 AAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCT 448682 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 ||||| | ||| | || || |||||||| || || | |||| ||| | Sbjct 448681 TTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA-- 448624 Query 77865 ACTCTAGCTTTTATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGAGTATATAGC 77921 | ||| | | | | | ||| | || | ||| |||||||| ||||||| | Sbjct 448623 AATCTTG-TGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 77922 CGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAAT 77981 ||||||||| ||||||||| ||| || || || |||||||| || ||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 448505 Query 77982 GACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041 | ||||| || ||| || |||| ||||||||| | |||||||| ||| | |||| | Sbjct 448504 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 448445 Query 78042 AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCC 78101 |||| |||||| | ||| |||||| || || ||| ||| | | ||| | ||| || Sbjct 448444 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 448385 Query 78102 ATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCT 78161 | |||||| ||||||||||| |||| ||||| ||| | | ||| || ||| || Sbjct 448384 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 448325 Query 78162 CCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTA 78221 || ||||||| ||| || || || | |||| |||| || |||||||||| | ||| || Sbjct 448324 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 448265 Query 78222 GATGTTCCATTTGTTCCAGAAATATA--ACTTC-CACTTGCGCGAATAT-TACTAATGGA 78277 ||| | ||||| ||||| |||||| | ||| || | | |||| | || | | Sbjct 448264 GATATACCATTAGTTCCTCTAATATAAGAATTCTGAC---CTCTTATATCTTGTACAGCA 448208 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||||| || ||||| | ||| || | ||| || |||| ||||| || | || Sbjct 448207 -ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATAT 448149 Query 78338 ACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 ||| || ||| || |||| | ||| |||||||| |||||||| | | Sbjct 448148 ACCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTG 448090 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||||| |||||||||||| || | ||||| || || |||||| ||| | || || Sbjct 448089 GGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAAT 448030 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | |||| ||| | || | ||||||||| | | || | ||| | Sbjct 448029 GATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTA 447970 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 | | ||| ||||| | ||||| | |||||||| ||| || || |||||| ||| | Sbjct 447969 ATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTA 447910 Query 78577 AAGTTTTAAAACCAAAATA 78595 |||||||||| |||||||| Sbjct 447909 AAGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 212 bits (234), Expect = 9e-50 Identities = 391/563 (69%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 ||||| || ||||||| ||| |||||||||||||| ||||||||||| ||| |||| Sbjct 1448023 ATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAAT 1447964 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | ||| | | ||| | ||||||| | |||||| ||||| ||| |||| Sbjct 1447963 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1447906 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||| ||||| |||||||| ||| || || ||| || | || | | | Sbjct 1447905 TAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAA---GAAT--T 1447851 Query 48313 TGTGT-ATCCA-CCGTTGTGC--CCAATCA-GCCTTCTTCTTTACACAAGGCATTGTTTC 48367 ||| | || | || || || || || | || || || |||| || || |||| Sbjct 1447850 TGTATCATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1447791 Query 48368 TATAGCATTAAAGAGAAAGtttt--tttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 ||||||| || | || || |||| || |||||||| ||| |||| ||||| Sbjct 1447790 AATAGCATGGAATA--AATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAAT 1447733 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 | |||||| |||| || || |||||||||| || || ||||| ||||| | | Sbjct 1447732 AAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTT 1447673 Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCA 48545 ||||| | || | ||| || | ||||| ||||||||| || |||||||||| Sbjct 1447672 GCTTCAATTATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCA 1447613 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT 48605 ||||| || |||||||||||||| |||||||| ||||||| |||||| || | | | | Sbjct 1447612 TCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAAT 1447553 Query 48606 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC 48665 || | | || || | ||| |||||| ||| | ||||||||||||||||||||| || Sbjct 1447552 TTTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCT 1447493 Query 48666 TCTGCTTTTTTATACATATTCCA 48688 || |||||||| || | |||||| Sbjct 1447492 TCAGCTTTTTTGTAAAAATTCCA 1447470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664649353920