Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 540 1e-148 seq2 233 3e-56 >seq11 Length=923120 Score = 540 bits (598), Expect = 1e-148 Identities = 1151/1698 (68%), Gaps = 38/1698 (2%) Strand=Plus/Minus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| ||||| | || | ||||| ||||| | ||||| ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 |||| |||||| | | || ||| | || | || | | | ||| ||| | | Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACTT 449456 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || || |||||| | || || || |||| |||||| ||| || | Sbjct 449455 CCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAAG 449397 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | ||||||||| |||| ||||| ||| ||||| | || | ||| Sbjct 449396 ATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTA 449337 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||| ||||| ||||||||||| | ||||||||| |||||||||||||| | ||||||||| Sbjct 449336 AATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 449277 Query 75814 AGTCGGCATAGGTGCCACCAATAAACT--ATTTCTGAGACCATGTGTTCTGATTTTATCT 75871 || ||||||||||| | || || | |||||| | |||||| | || ||||| | | Sbjct 449276 TGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTT 449219 Query 75872 TTTAGATATTTCCAATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTG 75927 |||| | | |||||||||| | | | || ||| ||| ||| | ||| |||| Sbjct 449218 TTTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTG 449160 Query 75928 TAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCC--GTCCTTTTCA 75985 || ||||| | ||| || || ||||||| ||| || | || || ||| | Sbjct 449159 TAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGT-- 449102 Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 |||| ||| | | ||||| || | ||||| ||||| || || || | ||||| Sbjct 449101 GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTT 449042 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 | |||| ||||| | ||| | ||||| |||||| ||||||| |||||||| | Sbjct 449041 AATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 448982 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATA 76165 || || ||||| || |||||||||| ||| || ||||| || ||||||||||| ||| Sbjct 448981 CCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATT 448922 Query 76166 GGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCC 76225 ||||||||||| | || |||||||||| | |||||| || | |||| | || Sbjct 448921 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCA 448862 Query 76226 TTTAGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATA 76279 | || ||| ||||| ||| |||| |||||| ||||| || | || || Sbjct 448861 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATT 448802 Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 || || | ||||||||| ||||| |||| || || |||| ||||| || ||| Sbjct 448801 GAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACAT 448742 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCC 76399 | |||||||| || || ||||| | ||||| ||| || || || |||| || Sbjct 448741 AAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCT 448682 Query 76400 TTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 76459 ||||| | | | | || ||||||||||| || || | |||| ||| | Sbjct 448681 TTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA-- 448624 Query 76460 ACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAAC 76516 | ||| | | | | | ||| | || || ||| |||||||| |||||||||| Sbjct 448623 AATCTTG-TGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 76517 CGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAAT 76576 ||||||||| ||||||||| ||| ||||| ||||||||||| |||||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 448505 Query 76577 GACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 76636 | ||| | || ||| || || | ||||||||| | |||||||| ||| | |||| | Sbjct 448504 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 448445 Query 76637 AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCC 76696 |||| |||||| | ||| |||||| || || ||| ||| | | ||||| || || Sbjct 448444 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 448385 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | |||||| ||||||||||| |||| ||||| || | | || || ||| || Sbjct 448384 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 448325 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816 || ||||||| ||| || || || | |||| |||| || |||||||||| | || || Sbjct 448324 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 448265 Query 76817 GATGTACCATTTGTTCCAGAAATATA--ACTTC-CACATGCACGAATATTACTAATAGAT 76873 ||| ||||||| ||||| |||||| | ||| || | | |||| | || Sbjct 448264 GATATACCATTAGTTCCTCTAATATAAGAATTCTGAC---CTCTTATATCTTGTACAGCA 448208 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||| || ||||| ||||| || | |||||| |||| ||||| ||| | || Sbjct 448207 ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATA 448148 Query 76934 CCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 76992 || || ||| ||| |||| | ||| |||||||| |||||||| | | Sbjct 448147 CCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGG 448089 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||||| ||||| || | ||||| ||||| |||||| ||| | || || Sbjct 448088 GGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATG 448029 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| | | || ||| | ||| | ||||||||| | | || | ||| || Sbjct 448028 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAA 447969 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 | ||| ||||| ||||| | | | |||||||| ||| || || |||||| ||| || Sbjct 447968 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAA 447909 Query 77173 AGTTTTAAAACCAAAATA 77190 ||||||||| |||||||| Sbjct 447908 AGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 233 bits (258), Expect = 3e-56 Identities = 422/611 (69%), Gaps = 17/611 (3%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 ||||| || ||||||| ||| || ||||||||||| ||||||||||| ||| |||| Sbjct 1448023 ATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAAT 1447964 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | |||||| || || ||| |||| Sbjct 1447963 GTTAAACCATGTAATTTATT--TTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1447906 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCAT 46798 ||| ||||| ||||||||| || || |||| ||| || | || | | || Sbjct 1447905 TAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTAT 1447846 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 |||| |||||| | |||||| || || || |||| || || |||| | Sbjct 1447845 CATT---AATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAA 1447789 Query 46859 TAGCATTAAAGAGA---AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 |||||| || | | || ||| || || |||||||| ||| |||| ||||| | Sbjct 1447788 TAGCATGGAATAAATTTAACCTTTCTTTTTC---ATCTTTAATATAATTATCGATTAATA 1447732 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 |||||| |||| ||||| || ||||||| ||| || ||||| ||||| | ||| Sbjct 1447731 AACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTG 1447672 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT 47035 ||||| | || | ||| ||| | ||||| || |||||| || |||||||||| Sbjct 1447671 CTTCAATTATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCAT 1447612 Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 |||| || ||||||||||| || |||||||| ||||||| |||||||| | | | || Sbjct 1447611 CACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATT 1447552 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | | | || || | ||| |||||| ||| | ||||||||||||||| ||||| || | Sbjct 1447551 TTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTT 1447492 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 | |||||||| || | |||||| | ||| ||||| || ||| | |||||||| Sbjct 1447491 CAGCTTTTTTGTAAAAATTCCAAACTTCAGGATATATAATAGGATGCAATGTAAATCTAT 1447432 Query 47216 TTGGATTTTTT 47226 || |||| ||| Sbjct 1447431 TT-GATTCTTT 1447422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930140216960