Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 109 1e-18 seq11 86.0 1e-11 >seq3 Length=1724855 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| || || ||||| | ||||||||| |||||||||| ||| || Sbjct 1545382 GTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1545441 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || || || || ||||| | | |||||||| || |||||||||||| ||| Sbjct 1545442 GCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGAATTTTTGCTTTA 1545501 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 1545502 ACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1545561 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 1545562 TTTACAAAGATTTGCATTTT 1545581 >seq11 Length=923120 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| || || ||||| | ||| ||||| |||||||||| ||| || Sbjct 406240 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 406181 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || || || | | || ||||| || |||||||||||| ||| Sbjct 406180 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTA 406121 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 406120 ACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTT 406061 Query 152088 TTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || || || | |||||| ||| |||| ||| Sbjct 406060 TTTACAAAAATCTGCATACCACCTCTTAATCT 406029 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| || || ||||| | ||| ||||| |||||||||| ||| || Sbjct 406468 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 406409 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || || || | | || ||||| || |||||||||||| ||| Sbjct 406408 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTA 406349 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 406348 ACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTT 406289 Query 152088 TTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || || || | |||||| ||| |||| ||| Sbjct 406288 TTTACAAAAATCTGCATACCACCTCTTAATCT 406257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813733568738