Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq11 125 6e-24 >seq3 Length=1724855 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| ||||| ||||| || ||||| ||||| || || | || ||||| Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 |||| || ||| | || ||| ||||||| || |||||||| ||||| || Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGAC 1545462 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||||| || |||| ||| || |||||||| |||||| | |||| | | |||||| Sbjct 1545461 CAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTAT 1545402 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGT 111308 ||||| ||||||||||| || ||||||| || Sbjct 1545401 AATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 >seq11 Length=923120 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| || || || |||||||| || | || ||||| | Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| || |||||||| ||||| |||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406223 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || ||||||| || || Sbjct 406224 ATTCAAAAAGAATCAACCTTACATTTGGTTTT 406255 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| || || || |||||||| || | || ||||| | Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| || |||||||| ||||| |||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAAT 406451 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || ||||||| || || Sbjct 406452 ATTCAAAAAGAATCAACCTTACATTTGGTTTT 406483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210 ||||| |||| || ||| | || ||| ||||||| || |||||||| ||||| Sbjct 405867 GAACCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCC 405926 Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 111270 ||||||||||| | |||| ||| || |||||||| |||||| | ||| | | Sbjct 405927 CCTGATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCT 405986 Query 111271 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111311 ||||||||||| ||||||||||| || ||||||| || || Sbjct 405987 GATTATAATATTCAAAAAGAATCAACCTTACATTTGGTTTT 406027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421808742686128