Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 268 1e-66 >seq2 Length=1580255 Score = 268 bits (296), Expect = 1e-66 Identities = 578/847 (68%), Gaps = 47/847 (6%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| |||||||| || |||| | | |||| || |||||||| || || | Sbjct 1448321 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 1448262 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 ||| ||||| ||||| ||| ||||||||| || || | | || |||| | | Sbjct 1448261 TAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAAC---TTTAGAACA 1448205 Query 23325 ---TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT- 23380 ||| | || | ||||| || |||||||||||||||||| |||| || || | Sbjct 1448204 CCCTAAACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTG 1448146 Query 23381 AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAA 23440 | || || || |||| | ||| | | ||| | | ||| | | || | || Sbjct 1448145 AATTCATTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAA 1448086 Query 23441 CAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT 23497 | || ||||||| ||| |||||||| ||||||| ||| || |||| | || Sbjct 1448085 CTGCTTCTTTAACTATATTTTGAACAA---CTTCTTC------TGG-TAATTTATTTTCT 1448036 Query 23498 --TAAACAATAAAC-ATGCAA----AATCACAATGTAGGCCTTCATCCCTACTAATCAAT 23550 ||||| ||||| | |||| ||||| |||||| |||||||| || ||||| ||| Sbjct 1448035 AATAAACTATAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAAT 1447976 Query 23551 TCATTAGAAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 |||||| ||||||||| || || ||| || | ||||||||| |||||| |||||| Sbjct 1447975 TCATTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACA 1447917 Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 ||| ||| ||| || ||||| || ||| ||| ||||||| | | | |||| Sbjct 1447916 AAAACTTCCACTAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAA 1447857 Query 23670 TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTC 23729 | ||| |||| ||||||||| | ||| | | ||| | |||| || Sbjct 1447856 AGA---ATTTGTATCATTAATCCATTTAGCAGCCCA-TAATGCTTTATTTTTTATTGCTG 1447801 Query 23730 A-ATTGTTTCAATTGCTTTTAAGAGA---AAAGTTTTTTCTTCATTATCTGTTATATATG 23785 || ||||||| || | || | | || ||| || ||||| || | ||||| Sbjct 1447800 GTATATTTTCAATAGCATGGAATAAATTTAACCTTTCTTTTTCAT---CTTTAATATAAT 1447744 Query 23786 TATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCAT 23845 |||| |||| ||||||||| |||||||||| |||||||||| ||| || ||||| || Sbjct 1447743 TATCGATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAAT 1447684 Query 23846 AAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGT 23905 |||| | | |||||| | || || || | |||||| | |||| |||||||| Sbjct 1447683 AAAATTTTTTTGCTTCAATTATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTA 1447624 Query 23906 TAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 23965 || || |||||||| || ||||| || || | ||||| ||||||||||||| |||||| Sbjct 1447623 ATACTATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCAT 1447564 Query 23966 ---CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTG 24022 || || ||||||| |||| || | ||| |||||||||||| ||| ||| ||| Sbjct 1447563 TTACATTT---AATTTTTCAAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTG 1447507 Query 24023 TCCAAAA 24029 ||||||| Sbjct 1447506 TCCAAAA 1447500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484884109200