Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 seq11 120 7e-22 >seq3 Length=1724855 Score = 134 bits (148), Expect = 3e-26 Identities = 152/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || ||||| | || |||||||| ||||| || || || ||| Sbjct 1545581 AAAATGC---AAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA 1545525 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| ||| ||||| || ||||||||||| || || Sbjct 1545524 CCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCT 1545465 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||| |||| || || || |||||||| | |||||||| || ||| | | ||| Sbjct 1545464 GACCAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGAT 1545405 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 ||||| | |||||||||||||| Sbjct 1545404 TATAATATTCAAAAAGAATCAAC 1545382 >seq11 Length=923120 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || |||||||| || || || || || ||| || || Sbjct 406047 CAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCCGAT 406106 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || |||||||| || || || || || ||| Sbjct 406107 ACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAA 406166 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | |||||||| || || | | |||||||| | Sbjct 406167 AGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAATATT 406226 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| | ||| | ||||| ||| | ||| Sbjct 406227 CAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGA 406265 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || |||||||| || || || || || ||| || || Sbjct 406275 CAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCCGAT 406334 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || |||||||| || || || || || ||| Sbjct 406335 ACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAA 406394 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | |||||||| || || | | |||||||| | Sbjct 406395 AGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAATATT 406454 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| | ||| | ||||| ||| | ||| Sbjct 406455 CAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGA 406493 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| || || || || || ||| || || || || || || || ||| || Sbjct 405841 CAGGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCAA 405900 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||| || |||||||| || || || || || ||| || | || || || ||||||| Sbjct 405901 AAATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAAC 405960 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | | |||||||| || || | | |||||||| | |||||||||||||| | ||| Sbjct 405961 AATTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACATT 406020 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||||| ||| | ||| Sbjct 406021 TGGTTTTAAGATTAAGA 406037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723827898732