Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq677 91.5 3e-13 seq223 87.8 4e-12 >seq677 Length=19565 Score = 91.5 bits (100), Expect = 3e-13 Identities = 247/373 (66%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| | | || || || || ||| | | |||||| || ||| | | |||| |||| Sbjct 3718 TTTATAATGCTTCTACGTCAGAATTATTTGGAAAGGTAAAAGCAGCTATTCAAGATGAAA 3659 Query 61144 GGACTCCGTTTTATCCTCGTAGC-CCGTATGGTGTTGCAAAACTATACGCTTACTGGATT 61202 || || ||||||||| ||| | || |||| | |||||||| | || || | | || Sbjct 3658 ATACGCCATTTTATCCT-GTATCACCATATGCTATTGCAAAATTGTATGCCCATTATATA 3600 Query 61203 TGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCA 61261 | |||||| | || || ||| |||||| | ||| | | | || | || ||||| Sbjct 3599 ACAATAAATTATAGGGAATCATATAATATGTTT-TGTGTGAATGGCATATTATTTAATCA 3541 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 || ||||| | ||||| | ||||| ||| | ||||| || | || |||||| Sbjct 3540 TGAAAGTCCAAGAAGAGGGGAAACATTTGTTACTAGGAAAATAACTAGGGGTATTGCAAG 3481 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 61381 |||| ||| ||| ||| | || ||||||| || || | | |||||||| Sbjct 3480 AATTTGTAAAAATGTTCAAACAGTTATAACGTTAGGAAATATTGATACATACAGAGATTG 3421 Query 61382 GGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 ||| |||| |||||||| | | || |||| || ||||| |||||||||| || || Sbjct 3420 GGGGCATGCTAAAGATTATGTACATGCCATGTATTTAATGTTACAACAAGATAAACCTGA 3361 Query 61442 TGACTACGTTATT 61454 || | |||||| Sbjct 3360 CGATTTTGTTATT 3348 >seq223 Length=94496 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 74921 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 74976 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 77316 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 77257 Query 165769 CCCC 165772 ||| Sbjct 77256 TCCC 77253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811083638390