Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq392 118 1e-21 >seq392 Length=30882 Score = 118 bits (130), Expect = 1e-21 Identities = 490/762 (64%), Gaps = 17/762 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||| | | || |||||| ||| | |||||||||||| || ||||| || | ||| Sbjct 27577 ACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGA 27518 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGT 16783 ||||| ||||| ||| ||||||||| | | |||| | ||| ||| | || | Sbjct 27517 GATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAA 27458 Query 16784 TCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATT 16843 | | |||||||| || |||||||| || ||||| |||||||| | |||||| Sbjct 27457 CATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATT 27398 Query 16844 CCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902 ||||| ||| | | || | || ||| | |||| | | |||| | || ||||| Sbjct 27397 CCTATCAAGTCACA-AGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTC 27339 Query 16903 CTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG 16962 || | |||| | ||| ||| || | | ||| || || | || | || | Sbjct 27338 TTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATATTAA 27279 Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 ||| || || ||||||||| || ||||| || || | ||| ||| ||| || | Sbjct 27278 ACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAG 27219 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 ||| | | || | |||| || ||||| || || || || ||| ||| || Sbjct 27218 CCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAA 27159 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142 |||||| || || ||||| || | || ||||| || | | | | ||| Sbjct 27158 TATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAA---AGAATTGGTATTATT 27102 Query 17143 AATCCATTTCTGCA-CCCACTCGGCTTTTTGCTTTA----TGCAATCCATCGTTTCTATG 17197 ||||||||| ||| ||||| ||||| | || | || || || ||||||| Sbjct 27101 AATCCATTT-GGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTAT--AT--TTTCTATT 27047 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || | |||||| || | |||| | || ||||||| |||| || | | ||| Sbjct 27046 GCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTG 26987 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 || |||| || || || ||||||| ||||| ||||| ||||| |||||| Sbjct 26986 TAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTCC 26927 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTC-CGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | ||||||||||| | | || || | | || | |||||| || || || || || Sbjct 26926 GTTATTTGAACTT-CTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACT 26868 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC 17418 || || ||||| || || | ||| || || |||| |||||| Sbjct 26867 TGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTC 26826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539434738040