Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq306 199 3e-46 >seq306 Length=50732 Score = 199 bits (220), Expect = 3e-46 Identities = 329/470 (70%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 ||||| |||| ||| | || |||| ||||| | |||| || |||| | ||||| | Sbjct 47310 TCAATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTGTGCAGGCTGT 47369 Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 | |||| || || |||||||| ||| || | |||||| ||||| ||||| || Sbjct 47370 AAATTACACACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGGG 47429 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 |||||||| || | |||| ||| |||||||||| ||| || | ||||||||| | Sbjct 47430 ACTCCTAAACCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCAAAA 47489 Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 ||||||||||| | ||| | ||||||||| || | |||||| | || ||| |||| Sbjct 47490 ACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCTTTAACA 47549 Query 101927 TTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAAC 101986 ||||| ||||||| | || |||||| || || | ||||||| || || | Sbjct 47550 TTCCATGCACACAAAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGGATAATA 47609 Query 101987 TGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCT 102046 | ||||||||| |||||||||| ||| ||| | | | | | ||||||| || Sbjct 47610 TTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGGCATGCATATTTGTATATTCAGCA 47669 Query 102047 CCGAAATGCCTCCACTGAAATCCATACACAGGTCC-AAG--ATCTCCTTCATCTCTGTCA 102103 |||||||||||||| ||||| ||||| | |||||| ||| || |||| ||| || | Sbjct 47670 CCGAAATGCCTCCATTGAAAACCATATATAGGTCCTAAGTCATTAACTTC-TCTATGGAA 47728 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 ||| | ||||| |||||| ||| | |||||| || ||||| || Sbjct 47729 TAATTTTC--TGTTATCCAAAAATTCTCTTGTTCCATTTGCTTCCCATAT 47776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247004180203