Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq306 178 9e-40 >seq306 Length=50732 Score = 178 bits (196), Expect = 9e-40 Identities = 292/419 (70%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| ||||| ||||| || |||| ||||||| | || || || | | |||| | Sbjct 47310 TCAATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTGTGCAGGCTGT 47369 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 |||| | || || || |||||| ||| |||| |||||| ||||| |||||||| Sbjct 47370 AAATTACACACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGGG 47429 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || |||| || | |||| ||| |||||||| | ||| || | ||||||||| | Sbjct 47430 ACTCCTAAACCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCAAAA 47489 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| || | || | |||||| || || | ||||||| || |||| ||| Sbjct 47490 ACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCTTTAACA 47549 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||||| | ||||||||| ||||| | | | ||| || || || Sbjct 47550 TTCCATGCACACAAAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGGATAATA 47609 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTG---TGCTTAAGACCTTG-ATATTC 97406 | |||||||||||||| |||| | |||| ||| ||| || ||| |||||| Sbjct 47610 TTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGGCATGCATA----TTTGTATATTC 47665 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTAT 97465 || || |||||||||||||| || ||||| | |||||| | ||| ||||||||| Sbjct 47666 AGCACCGAAATGCCTCCATTGAAAACCATATATAGGTCCTAAGTCATTAACTTCTCTAT 47724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346779972212210