Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq306 286 5e-72 seq124 179 6e-40 seq60 145 1e-29 seq341 136 6e-27 >seq306 Length=50732 Score = 286 bits (316), Expect = 5e-72 Identities = 530/770 (69%), Gaps = 21/770 (3%) Strand=Plus/Plus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | |||| || |||| ||| | | | ||| ||| |||||| | | | Sbjct 47253 TTTAATTTAAGAGTTGGGAAGGGGTAGGGTATCCTATTTAACTGTACTTTTAAGCTGTCA 47312 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 ||||||||| ||| | ||||||||| || | | |||| || || | || | |||| Sbjct 47313 ATATGATTATTATAAACATGTGCATTTCCTAAAATATGTATGAACTGTGCAGGCTGTAAA 47372 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| | ||||||||||||| ||| |||| ||| |||| |||||| || || Sbjct 47373 TTACACACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGGGACT 47432 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||||||| | |||| ||| ||||||||||| ||||| | |||| || || Sbjct 47433 CCTAAACCTAAATCACATGACCTTTGATACATAATACATGATA---ATTTTCCATCAAAA 47489 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| |||||| ||| ||||||||| |||| |||| | |||| |||| || | Sbjct 47490 ACATAAAATTGGCATAAAATATGACAAGGAGGTAGTGCCATTTGATCAAGATCTTTAACA 47549 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || || || || ||||| || | |||||||||| || |||||| Sbjct 47550 TTCCATGCACACAAAATAATTCTTCTACTAGTTGGATCATTTTTTATTAAATGGATAATA 47609 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | |||||||||||| ||||| || | ||| || | || ||||| |||||| |||| Sbjct 47610 TTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGGCATGCATATTTGTATATTCAGCA 47669 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800 || ||||| | ||||||||||||||| | || ||||| ||| ||| |||| | Sbjct 47670 CCGAAATGCCTCCATTGAAAACCATATATAGGTCCTAAGTCATTAACTTCTCTA----TG 47725 Query 205801 AAACCACGtttttttat----atattttaatgatccattttcatcccaaat--atggatt 205854 || | || | |||| | ||| | || ||||||| | ||||| || | ||| Sbjct 47726 GAATAATTTTCTGTTATCCAAAAATTCTCTTGTTCCATTTGCTTCCCATATTCTTACATT 47785 Query 205855 cctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCA 205914 ||||||| | | ||||| ||| ||| ||| ||||||||| | ||| |||||| Sbjct 47786 --TTTATTTAACAAAGTATTTCCATTTGTTTCTCCTCTTATAAACCAAAGTAACTCTTCA 47843 Query 205915 ACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTA 205974 | |||||||| || | | |||||||| ||||||||||| | | || ||| ||| Sbjct 47844 ATTATTCCTCTAAGGAATAATTTCTTTGTTGTTAATAATGGAAAATATTGATTTAAATTA 47903 Query 205975 TATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTA 206032 |||||||| | | ||| || | || | ||||||||||||| | ||||| ||| Sbjct 47904 AATTTCATAATATACCCAAATTTACTTAGTACTCCTACACCTGTTCTGTCATTTTGTTTA 47963 Query 206033 TTCTTCCATTAGATAAT-ATTTCTGATATACCTTTTAAATATTGATATTC 206081 | ||||||| ||||| || || ||||| |||||||||||||||| Sbjct 47964 T--TTCCATT-CATAATGATATCATATATAATACTTAAATATTGATATTC 48010 >seq124 Length=28153 Score = 179 bits (198), Expect = 6e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| ||| ||||||| ||||| ||||| | || |||| || Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||| || ||||| || ||||||||||| Sbjct 11703 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGACAAGGAAGGAATTCCACCTGATCA 11645 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || |||||||||||||||||||| ||| || |||||||| ||| || || Sbjct 11644 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAA 11585 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| || || || ||| | ||| |||| ||||| Sbjct 11584 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGTAT 11534 Score = 172 bits (190), Expect = 8e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| ||| ||||||| ||||| |||||| | || |||| || Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||| ||||| || ||||| || |||||||||||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || |||||||||||||||||||| ||| | ||||||| ||||| || Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| ||||| | || || |||||| | ||| |||||||| || ||| || Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGGTTTTTAAATTT 11298 Score = 156 bits (172), Expect = 6e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAGA 124623 ||| |||||||||||| | || ||||| || ||||| ||| ||| |||| || | Sbjct 11965 AGGAAAAACTATAACTCTTGATGTTGAACCATCGGATACTATTGAGAATGTTAAGGCA-A 11907 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 ||||||||||||| ||||| || |||||||||||||| || | || ||||| ||||||| Sbjct 11906 AAATTCAAGATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGGAAAAC 11847 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| | ||||||| ||||| || ||||||||||| || ||||| || | Sbjct 11846 AATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTTACACT 11787 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||| | ||| |||| ||||| Sbjct 11786 TAGTCTTAAGATTAAGAGGAGGTAT 11762 >seq60 Length=41302 Score = 145 bits (160), Expect = 1e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| || ||||| || ||||| || || | || | ||| || Sbjct 5933 AATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCATC 5992 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| |||| |||||||||||||| || || || ||||| || || Sbjct 5993 TGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGACCA 6052 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || ||||||||||||||||| |||| ||| | |||| ||| || || || Sbjct 6053 ACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTACAA 6112 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||| || || |||||||| ||||| Sbjct 6113 TATTCAAAAGGAGTCTACTTTGCACTTGGT 6142 >seq341 Length=12996 Score = 136 bits (150), Expect = 6e-27 Identities = 313/473 (66%), Gaps = 10/473 (2%) Strand=Plus/Plus Query 202738 ATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATA 202797 ||||||| ||| | | | || |||||| || | | | ||||| | |||| ||||||| Sbjct 1905 ATATTTTGACATATACATGTTAATATCAAAATTTCTTTTGCATCCATTATAATTCATATA 1964 Query 202798 TCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGA 202857 || || ||||||||||| || |||||| ||||| | ||||| | ||| ||| || Sbjct 1965 TCGAACTTTACCAAATACTGTTCTTTCATTCCAACTTTGGTCATGTACACCCATAATGGA 2024 Query 202858 CCACATACATCCAACATATCCATTTGGATCACG----TCCATCTATAAAATATTTATCAT 202913 ||||||| | ||||||||||||| | ||| |||||| || | ||| || | Sbjct 2025 CCACATAATTGCAACATATCCATTCG----ACGTTTTTCCATCAATTGCAAATTCCTCGT 2080 Query 202914 TTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTT-TGTCCATTCTAATAttttt 202972 |||| | | || || ||| ||| || ||| | | |||||| Sbjct 2081 TTAATTTTATAGCATATTTTAGAGC-AGTTTTGGAATTTTCTGACCAGTTCAGAATTTTT 2139 Query 202973 ttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGT 203032 || ||||| |||||| ||||| || |||| ||| | || | |||| | |||| ||| Sbjct 2140 TTTGCCCAGTACATTTTTAAAAATTCATGAATTATTCCTTCATTAATTAATTGTAATTGA 2199 Query 203033 GATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATA 203092 | |||||||| || | || || ||||||| || | | || |||| Sbjct 2200 CAACAATTCCATATATCATTGTGTGTCTTCGCATTTTTAAAATCGTCGTAATCGTATAGG 2259 Query 203093 TGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCA 203152 |||| ||| ||||| | ||||| |||| ||| | ||||||| | || | ||| Sbjct 2260 TGTTCTCTTTTATCAGCATCATGTTTTTTTAAACTTTCTTTTGCCCATTCCTTTCCCCCA 2319 Query 203153 TTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTT 203205 || | |||||| ||||||| ||| ||||||||| |||| ||| ||| || || Sbjct 2320 TTAAAATTATCATAATTTTTATTGTAATAACAATAATTGTCAGCTAGCTCCTT 2372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447000630400