Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq27 594 5e-165 seq392 235 5e-57 >seq27 Length=5678 Score = 594 bits (658), Expect = 5e-165 Identities = 1058/1526 (69%), Gaps = 41/1526 (3%) Strand=Plus/Plus Query 37110 TAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGT 37169 ||| ||| | || | || || || || || ||| |||||| || |||||||| Sbjct 854 TAGATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATA 913 Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||| || || |||||||| ||||||| ||| || ||||| | | ||||||||||||||| Sbjct 914 ATAAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGA 973 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 ||||| ||||| ||||| | ||| | ||| || || |||||| || ||| | Sbjct 974 AGCAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAG 1033 Query 37290 TTTTAGTTCATTCCAATCCCATAAAT--CTGTTGGGTTCTTTAA-CCACATATCATATTG 37346 |||||||||| ||||| ||| | | || | | |||| |||||||||| |||| Sbjct 1034 CTTTAGTTCATCCCAATTCCAGTACTTACTATCTACCTTTTTATTCCACATATCAAATTG 1093 Query 37347 TAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGC 37406 ||||||||||| ||| |||||| | | | ||| | ||||||||||| | ||| | || Sbjct 1094 TAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCATTGC 1153 Query 37407 TAGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 || ||| || |||| ||||| || ||||| || || |||||||| ||| | |||| Sbjct 1154 TAATTC-CA--TAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATT 1210 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 || ||| ||||| || || | | ||| | ||| | ||||| ||| || || Sbjct 1211 CAACTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAA 1270 Query 37524 ACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCAC 37583 ||||||||||| |||||||| |||||||| |||| ||||| | |||| | | Sbjct 1271 CCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAAT 1330 Query 37584 TGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTAT 37643 || |||||||| | || |||||||||| ||||||| || | ||||| |||||| Sbjct 1331 AGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTC 1390 Query 37644 TCTCAACTTGTCGAACATAAATACGTTATTATTAA------CAAATTTACTCAACGAAAT 37697 || || | || ||||| | || || | | ||||||| | || | ||| Sbjct 1391 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1450 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACA 37757 ||| | ||||||||||||||||||||||| | || | | ||||| || ||| Sbjct 1451 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1510 Query 37758 GAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATC 37817 | |||||| || | || || || | ||| ||||||| ||||| |||||| || || Sbjct 1511 TAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1570 Query 37818 TTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAA 37877 |||||||| ||||| || ||| ||| |||||| | | |||| |||||| Sbjct 1571 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1630 Query 37878 ACTTCTTGCTTTAACGATCGCTTTAAt-----ttttttCTTTGTTTCGTATTCTATATAT 37932 | ||||| ||| | | ||| | | ||||||| ||| || | | |||| Sbjct 1631 A--TCTTGTGCTAAT-ACAGTTTTTTTGCCCATATTTTCTTC--TTCATACTTAACATAT 1685 Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992 ||||| | ||| || | |||||| || | || |||||| ||||| |||||||||| Sbjct 1686 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATT 1745 Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052 | || ||| | || || || || ||| | || ||| || || ||||| ||||| | ||| Sbjct 1746 AAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCA 1805 Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112 ||| |||||| | | ||| ||||||| || || ||| |||||||| || ||| Sbjct 1806 TAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAAT 1865 Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||||||||| | ||||||||||| ||||||| | | | ||| |||||| | Sbjct 1866 TCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCT 1925 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| |||| | ||||||| |||| | |||| | | ||||||||||||||| | ||| Sbjct 1926 CCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCA 1985 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTAT 38288 || || | || || |||| ||||| | | | ||| ||||| |||| Sbjct 1986 TTTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTCCTCTTATATCTTGTACT--G 2043 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATTGTTTTAACGTATCAA 38347 | ||| ||||| ||||| || |||||| || ||| ||| || ||||||| || || | Sbjct 2044 CTACA--CCTATACCACCAGC-TGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGA 2100 Query 38348 ATATACCTTCTAT--ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGG 38405 ||||||||||||| | | | || || || | || | ||||||| |||||||| || Sbjct 2101 ATATACCTTCTATTGAATCTGAT--TTCATAGATAAAAGAAAACAAGACGACATTTGGGG 2158 Query 38406 CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAA 38465 ||||| || | ||||||||||| || | ||||| |||| |||||| |||| Sbjct 2159 TCTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACAT 2218 Query 38466 ATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCT 38525 ||| ||| ||||||| | | | |||||||||| | || ||||||| ||||| || Sbjct 2219 CAAATGATAAGTTTCTAATGCTTTATCTATATCATCAATATGTATACCTATCGATACTCT 2278 Query 38526 CATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTGTTTAAGTAGATACGATT 38584 ||||| | ||||||||||||||| || ||||| || || | ||| || ||| ||| Sbjct 2279 CATTAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAA-TAAATAAGATC 2337 Query 38585 TTTCTAATGTTTTTATTCCAAAATAA 38610 |||||||||| || | |||||||||| Sbjct 2338 TTTCTAATGTCTTAAATCCAAAATAA 2363 >seq392 Length=30882 Score = 235 bits (260), Expect = 5e-57 Identities = 560/835 (67%), Gaps = 10/835 (1%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || ||||| | |||||||||||| || || |||| || ||||| | Sbjct 27568 TTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGAGATATCAAA 27509 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| | | || ||||||||| || ||||| | ||| Sbjct 27508 TCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAACATTCTAAC 27449 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| || || || |||||||| | ||||||| ||||| | Sbjct 27448 AATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATTCCTATCAAG 27389 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCTT-TTCTATATTAACCGCATCAATGATTA 11576 || || | || | | || | || | | ||||| | || || || | | | Sbjct 27388 TCACAAGGTAAAG--ATTCACATATAAATGATCGTTCTACTTCTACTGCTTCTTTTACAA 27331 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636 | | | || ||| | | | | || | | | || | |||||||| || Sbjct 27330 TATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATATTAAACAGTTAA 27271 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 | || |||||| ||||| |||||||| |||| ||||||| ||| |||| || | | Sbjct 27270 AGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTA 27211 Query 11697 -TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 | || | ||||||| | ||| || |||||| ||| |||| ||| ||||| || Sbjct 27210 ATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAATATACCT 27152 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTT 11815 || ||| |||| |||||||| | |||| || | ||| | || |||||||| Sbjct 27151 TCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGTATTATTAATCCATTTG 27092 Query 11816 CTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGC 11875 ||||| |||||| ||||| || | || ||||||| |||| |||||||| Sbjct 27091 GCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTT 27032 Query 11876 ATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | | || | | ||| ||| ||| |||| || || ||||| || ||||||||||| Sbjct 27031 AATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGA 26972 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACACTGTACATC 11994 ||||| |||| ||||||||||| ||| ||| || | || || | || || | Sbjct 26971 ATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAAC-TT 26914 Query 11995 CACATAAAATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 | | ||||| || | || ||||| || || || |||||||| | ||||||||||| Sbjct 26913 CTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATG 26854 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 ||| | |||||||||||| | |||||| | || | ||||||| || |||| | |||| Sbjct 26853 CTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAAT 26794 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | |||||||||||| ||||| | |||||||| || ||| || |||||| Sbjct 26793 CGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 26739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519218698320