Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq27 331 1e-85 seq392 170 3e-37 >seq27 Length=5678 Score = 331 bits (366), Expect = 1e-85 Identities = 1102/1701 (65%), Gaps = 44/1701 (3%) Strand=Plus/Plus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 678 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 737 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 65096 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 738 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 797 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| || || || | | | || || || || | |||||| || ||| || | Sbjct 798 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 857 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 858 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 917 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 918 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 977 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 978 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1037 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT-----TGTA 65391 || ||||||||||| | | || | | | | |||| Sbjct 1038 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1095 Query 65392 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 ||||||| | ||| || | || | ||| ||| | || || ||||| | || ||| Sbjct 1096 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1154 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGA-TCTTCTTATTTAG 65509 | ||| | | ||||| ||| | || || ||||||||||| | ||||| |||| | Sbjct 1155 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTC-TATTCAA 1213 Query 65510 ATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| |||| || | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1214 CTCTTTAGCTT-CATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1272 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1273 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1332 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 | |||||||| | || || ||||||| |||||||| ||| | ||| | || | Sbjct 1333 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1392 Query 65689 TCAGTTTGAGAAAATCAAATCGCTCATCTATT---------ACAAACATGTTCAATGCAA 65739 | ||| ||||| |||| || | | || ||||| || || |||| Sbjct 1393 ATAATTTTTTAAAATTAAAT---TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAA 1449 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 ||| || |||||||| || || || |||| || | ||| | || || ||| | Sbjct 1450 TAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAAC 1509 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | | ||||||||| ||||| || |||| ||||| |||||| || ||||| | | Sbjct 1510 ATAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGT 1569 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 | ||||| | || ||||| ||| |||||||| ||| || || || || ||| | Sbjct 1570 CTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATA 1629 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 65976 || | || || || || ||| | | | |||||| ||| || ||| | Sbjct 1630 AATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATA 1686 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || ||| || || || ||||| | | ||| || ||||||| |||||||| | Sbjct 1687 ATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTA 1746 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | | ||| | | | || || |||| |||||| || | ||||||| ||||| ||| Sbjct 1747 AAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCAT 1806 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 ||| |||||||| | ||| ||| || || || ||| ||| | | ||| | || Sbjct 1807 AAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATT 1866 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | ||||| ||||||| ||||| | || | || | | || | ||| || Sbjct 1867 CGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTC 1926 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 |||| ||||||| |||||||| || | |||| ||||||| ||||| || | | |||| Sbjct 1927 CTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCAT 1986 Query 66277 TGGATGTACCATTGGTCCCGGAGATATA-GCTTCCACTTG--CACGAATATTACTAATTG 66333 | || | ||||| || || ||||| | | ||| | | |||| | || Sbjct 1987 TTGAAATTCCATTCGTACCTCTAATATACGAAT---TTTGTCCTCTTATATCTTGTACTG 2043 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 || |||||| || || || ||||| || | || || |||||| || || | | Sbjct 2044 CTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATA 2103 Query 66394 TGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 | || ||||| ||| |||| | ||| |||||||| ||||||||| | | | Sbjct 2104 TACCTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTA 2162 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 ||| || | ||||||||| || || | ||| || || || |||||| ||| | | | Sbjct 2163 GGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAA 2222 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCAT 66571 | || || || | ||| |||||||| || | ||| || |||| | || | ||| Sbjct 2223 TGATAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCAT 2281 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 ||| | || || |||||||||| || |||||||| || || || || ||| |||| Sbjct 2282 TAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTC 2341 Query 66632 CAAAGTTTTAAAACCAAAATA 66652 || || ||||| |||||||| Sbjct 2342 TAATGTCTTAAATCCAAAATA 2362 >seq392 Length=30882 Score = 170 bits (188), Expect = 3e-37 Identities = 228/312 (73%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| || | ||| |||||||||| | ||| || |||| |||||||| || || | || Sbjct 27017 ATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGC 26958 Query 36478 CATTTGAAATCCGTAGAAACATCT-AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 |||||||| || ||| ||| ||| || || || || |||||| | ||||| | Sbjct 26957 TATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATT-TA 26900 Query 36537 CT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 36595 || || |||||||| |||||||| ||||| ||||||||||| || || ||||||||| Sbjct 26899 CTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTT 26840 Query 36596 ATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 36655 ||||||| |||||| ||| ||| ||| | |||| || | ||| | |||| ||| Sbjct 26839 ATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCT 26780 Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 | ||||| ||||||||||||| || ||||| |||||||| | | ||| | ||| || Sbjct 26779 ATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATAAAAGTCCCATACGTCTGGA 26720 Query 36716 TATTGAATTGGA 36727 || ||||||| Sbjct 26719 TACAAAATTGGA 26708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164959516520