Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq392 199 4e-46 >seq392 Length=30882 Score = 199 bits (220), Expect = 4e-46 Identities = 583/885 (66%), Gaps = 21/885 (2%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||| ||| ||||| || |||||||||||| || || || ||||| |||| Sbjct 27580 ATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGA 27521 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || ||||| ||||| ||| ||| |||||| |||| ||| ||||| || ||| Sbjct 27520 AGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCT 27461 Query 13689 AG---TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 | |||||| | |||||||||| | ||| ||||| ||||| |||||||| || Sbjct 27460 AAACATTCTAACA---ATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAA 27404 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGT-TAAAAATTCTTTTTCTATAGACAC 13804 ||||| ||||| | | ||| | | ||| || |||| | ||||| || Sbjct 27403 TTCATTCCTATCAAGTCACAAGGTAA-AGATTCACATATAAATGATCGTTCTACTTCTAC 27345 Query 13805 AGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTA 13862 || ||||||| |||| | || ||| || | | | | |||||| || | || Sbjct 27344 TGCTTCTTTTACAATATTCTGAACAATTTCTTCTG--GTAATTTATTTTCCAGCAGACTA 27287 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 | |||||||| ||| || ||| | || |||||||||||||| | ||| || | Sbjct 27286 TATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTA 27227 Query 13923 AATGTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || |||| || || || || | ||||||| ||||| || || ||| ||| || Sbjct 27226 AAAGTTAGCCCATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTACC 27168 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||| ||||| || || || ||| |||| || |||||| |||| || | Sbjct 27167 ACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGT 27108 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 || || |||||||| |||||| || ||| ||||||| | || |||| Sbjct 27107 ATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 27051 Query 14102 AATAGCATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 || || | |||||||| | || || ||| | ||| | || || ||||||| | Sbjct 27050 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATA-AT-TATCAATCAAC 26993 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 || || || |||| || || || || |||| ||||| |||||| |||||| || Sbjct 26992 AAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTA 26933 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 ||||||| ||| ||||| ||||| | ||||||||||| |||||| ||| Sbjct 26932 GCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCA 26873 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| |||||||||||||| || | | ||| ||||| | || || | | || | | Sbjct 26872 TCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAAT 26813 Query 14340 TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 |||| |||| ||||| | || | ||||| || || |||||||||| ||| Sbjct 26812 TTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCT 26753 Query 14400 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14444 | ||||||||||| | |||||| ||| ||| || || ||| Sbjct 26752 TCTGCTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 26708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722285240200