Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq27 351 1e-91 seq392 159 5e-34 >seq27 Length=5678 Score = 351 bits (388), Expect = 1e-91 Identities = 1103/1695 (65%), Gaps = 32/1695 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 678 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 737 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 71058 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 738 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 797 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 ||| || ||||| | | | ||| || ||||| | |||||| || ||| || | Sbjct 798 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 857 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 || | | | |||||| ||||| || |||||||||| ||| ||||| | | ||| Sbjct 858 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 917 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 918 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 977 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 || ||||||||||| | | || | ||| || | ||||||| || ||||| ||| Sbjct 978 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1037 Query 71299 AGAGATTCCCAATTCCA-AAGATCCGATGGTAC---AACNNNNNNNNNNNNNNNNNNNNN 71354 || ||||||||||| | | | || ||| Sbjct 1038 AGTTCATCCCAATTCCAGTACTTACTAT-CTACCTTTTTATTCCACATATCAAATTGTAG 1096 Query 71355 NATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTA 71413 || || | |||||| | | | |||| ||| | || || ||||| | | |||| Sbjct 1097 AATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCTA 1155 Query 71414 GTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA-AATCTTCTTATTGAGA 71472 ||| | | ||||| || |||| || ||||||||||| | ||||| |||| | Sbjct 1156 ATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTC-TATTCAAC 1214 Query 71473 TCTTGTGCTTC--CGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 |||| ||||| | | | ||| | ||||| | || || ||||| | |||||||| | Sbjct 1215 TCTTTAGCTTCATCCGAC--TCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1272 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 | ||||| || ||||| |||||||| || ||||| ||||| | || |||||| ||||| Sbjct 1273 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1332 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 | |||||||| | || || ||||||| |||||||| || | ||| | || | Sbjct 1333 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1392 Query 71651 TTAGTTTGAGAAAATCAAATCTCCCATCTATTACAA----ACACGTT----CAAGGCAAC 71702 || ||| ||||| ||| | | | | || ||| ||| || || |||| Sbjct 1393 ATAATTTTTTAAAATTAAA--TTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1450 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || |||||||| || || || |||| || | ||| | ||||||||| || Sbjct 1451 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1510 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | ||||||||| ||||| || |||| ||||| |||||| || ||||| | || Sbjct 1511 TAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1570 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||||| | ||| | ||| ||| |||||||| ||| || || || || ||| | Sbjct 1571 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1630 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 || | || || | || ||| | |||||| ||| || | ||||||| Sbjct 1631 ATCTTGTGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAATTT 1690 Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || ||||| | | || ||| || |||||||| |||||||| || | Sbjct 1691 TTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAAAGT 1750 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| | | || || ||||||| |||||| || | ||||||| ||||| ||| ||| Sbjct 1751 CCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATAAAA 1810 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | |||||| | ||| || || || || ||| ||| | | ||| | || | | Sbjct 1811 CAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTCGAA 1870 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||||| |||||||| ||||| | || | || | | || | ||| |||||| Sbjct 1871 TATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCCTCC 1930 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||||| |||||||| || | |||| ||||||| ||||| || | | ||||| || Sbjct 1931 TTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATTTGA 1990 Query 72243 TGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 ||||| || || ||||| | | | | | |||| | || || || Sbjct 1991 AATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTACAC 2049 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 |||| || || || ||||| || | || || |||||| || || | || || | Sbjct 2050 CTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATACCTT 2109 Query 72362 CTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 |||| ||| |||| | ||| |||||||| ||||||||| | | | ||| Sbjct 2110 CTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGAGTA 2168 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | ||||||||| || || | ||| || || || |||||| ||||| | || || Sbjct 2169 CCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGATAA 2228 Query 72481 GTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || || | ||| |||||||| || | |||||| |||| || || | |||||| | Sbjct 2229 GTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAATAA 2287 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||| || |||||||||| || ||||| || || || || || ||| |||| || || Sbjct 2288 ATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAATGT 2347 Query 72600 TTTAAAACCAAAATA 72614 ||||| |||||||| Sbjct 2348 CTTAAATCCAAAATA 2362 >seq392 Length=30882 Score = 159 bits (176), Expect = 5e-34 Identities = 353/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || |||||||||||||||||||| || ||| || || || | | | | ||| Sbjct 27256 CCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAGCCCATGTAATTTATTTTGTTTT 27197 Query 42146 TTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 |||| ||| || |||| | |||| | ||| ||| || || |||||||| ||| Sbjct 27196 TTAAACCAGAAAATAG-CACAAAAACTACCACTAAACAATATACCTTCTACACATGCATT 27138 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCACTTTTGAGCCCAATC 42261 || | | | ||| || || | | || | || ||||| || |||||| Sbjct 27137 TGCTACTATCCGTTCTGCAAAA---GAATTGGTATTATTAATCCATTTGGCAGCCCACAA 27081 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATT 42321 || || ||||| ||| || || ||||||| || | ||| | || | || || Sbjct 27080 AGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTT 27021 Query 42322 ACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 ||| || | ||| |||| ||||| | ||| || ||||||||||||| || || | Sbjct 27020 TTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCAC 26961 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTTCTGTACAAAATC 42440 || || ||||| || ||| ||| || || || | || |||||| | ||||| Sbjct 26960 TGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATT 26902 Query 42441 GTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 42500 ||| |||||||| |||||||| ||||| ||||||||||| || || ||||||| Sbjct 26901 TACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCTGCAAAAAATGCTAACACATGTT 26842 Query 42501 TTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATAT 42560 ||||||||| |||||| | ||||||| | |||| || | ||| | |||| || Sbjct 26841 TTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAAT 26782 Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 ||| |||||| | ||||||||||| |||||||| |||||||| Sbjct 26781 CTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTTTTATA 26739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131205054280