Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq124 150 1e-31 seq60 104 2e-17 >seq124 Length=28153 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||||||||| || ||||| || |||||||| ||||||||||| Sbjct 11309 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGAC 11368 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| || || |||| || | ||||| || |||| Sbjct 11369 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11428 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||| ||| | || |||||||| || ||| Sbjct 11429 ATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11488 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| ||||| | ||||||||||| ||||||||| Sbjct 11489 TCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCATA 11536 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||| || | ||||| |||||||| |||||||| || | Sbjct 11537 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGAT 11596 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| || || |||| || | ||||| || |||| Sbjct 11597 AATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11656 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| |||||| ||| ||| | || |||||||| || ||| Sbjct 11657 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11716 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| ||||| | ||||||||||| ||||||||| Sbjct 11717 TCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCATA 11764 Score = 109 bits (120), Expect = 4e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||| ||||| || | ||||| |||||||| ||||||||||| Sbjct 11765 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGAC 11824 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| || || |||| || | ||||| || |||| Sbjct 11825 AATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGA 11884 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| || || |||||| ||| ||| | || || ||||| | || ||| || Sbjct 11885 ATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATC-CGATGGTTCAAC 11943 Query 15316 ATCTAAGGTAATGGTTTTACCT 15337 ||| | || || ||||| ||| Sbjct 11944 ATCAAGAGTTATAGTTTTTCCT 11965 >seq60 Length=41302 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| || ||||| || || |||| | ||||||| ||||| || Sbjct 6130 GTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGTTTTCCT 6071 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | || | | ||||||||| ||||||||| || || || |||||| |||| Sbjct 6070 GCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTTT 6011 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || || || || ||| ||||| | ||||||||||| || || |||||| Sbjct 6010 ACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGTT 5951 Query 15347 TTTACAAAAATTTGCATATTTG 15368 ||||| ||||||||||| |||| Sbjct 5950 TTTACGAAAATTTGCATTTTTG 5929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174993401773