Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 6e-16 >seq60 Length=41302 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| || ||||| ||||| |||||||| ||||| || | | || || Sbjct 6142 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCT 6083 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || ||||| ||| |||| | ||| ||||| | || || || || || || | Sbjct 6082 AGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGA 6023 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || |||| |||| | | ||| ||||| |||| || || || || || ||| Sbjct 6022 ATTTTTGCCT---TTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTT 5966 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||||||| ||||||||||||||||||||||| ||| Sbjct 5965 TTTCCCGTTAGAGTTTTTACGAAAATTTGCATTTTT 5930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318773897497794