Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq124 89.7 4e-13 >seq124 Length=28153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || || |||| || || |||||||| |||||||| || Sbjct 11537 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGAT 11596 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| |||||||| || ||| | || | ||||||||||| || Sbjct 11597 AATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11656 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||||||| || || | ||| | ||| || || Sbjct 11657 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11716 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 11717 TCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || || |||| || || |||||||| ||||||||||| | Sbjct 11765 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGAC 11824 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| |||||| | || | ||||||||||| || Sbjct 11825 AATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGA 11884 Query 20102 ACGCCTTCTTTGTCGGCAATTTTT 20125 | ||||| || || ||||||| Sbjct 11885 ATTCCTTCCTTATCTTGAATTTTT 11908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582326625793