Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq124 181 2e-40 seq60 170 4e-37 seq392 105 2e-17 >seq124 Length=28153 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||||| || || ||||| ||||| || ||||| Sbjct 11534 ATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCT 11593 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||||| ||||||| ||||||||| ||||| |||| |||||||||||||| Sbjct 11594 GATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGT 11653 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || ||||| ||||| || ||||| || | |||||| || || Sbjct 11654 GGAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCA 11713 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || || | |||||||||||| || ||||| Sbjct 11714 ACATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| |||| || || ||||| ||||| || || || || Sbjct 11309 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGAC 11368 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||||| ||||||||| ||||| |||| |||||||||||||| || Sbjct 11369 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11428 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || || || || || || || ||||| || | |||||| || || || Sbjct 11429 ATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11488 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || | |||||||||||| || ||||| Sbjct 11489 TCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||||| || || ||||| ||||| || || || Sbjct 11762 ATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCC 11821 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| || ||||||| ||||||||| ||||| |||| |||||||||||||| Sbjct 11822 GACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGT 11881 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| ||||| ||||| || ||||| || | ||||| ||||| Sbjct 11882 GGAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCA 11941 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || ||||| || || Sbjct 11942 ACATCAAGAGTTATAGTTTTTCC 11964 >seq60 Length=41302 Score = 170 bits (188), Expect = 4e-37 Identities = 165/211 (78%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| || || |||||||| |||||||||| ||||| || |||||||| ||| Sbjct 6136 TGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGT 6077 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| ||||||||||| || ||||| || || || ||||| || ||||| ||||| ||| Sbjct 6076 TTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTT 6017 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || |||||||| || | || || ||||| || || || ||||| || || || || Sbjct 6016 GCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTT 5957 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 || |||||||| || || |||||||| |||| Sbjct 5956 AGAGTTTTTACGAAAATTTGCATTTT-TGTA 5927 >seq392 Length=30882 Score = 105 bits (116), Expect = 2e-17 Identities = 350/539 (65%), Gaps = 8/539 (1%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 ||||| |||||||| | |||||| ||||| | || || || | ||||| |||| Sbjct 26754 GCTTCATTTTGGACAGCAGAAGAGATAGATTTATCAAGCGATTTGAAAGATTTTGAAAAA 26813 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 ||||| | | |||| | |||||| || | | || |||||||||| |||||| Sbjct 26814 TTAAATGAAAATGAAAAACATTTTATAAAACATGTGTTAGCATTTTTTGCAGCAAGTGAT 26873 Query 268880 GGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAG--GTACAGATTCCTGAA 268936 || || ||| |||||| | | ||| || || | ||||| || || || | ||| Sbjct 26874 GGAATAGTTTTAGAAAATTTGGCTAGTAAATTTTT---AAGAGAAGTTCAAATAACGGAA 26930 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | ||||| || || ||||| | || |||||||||||||| | |||||| Sbjct 26931 GCTAAGAAATTTTATTCTTTTCAAATAGCAGTGGAGAATATTCATTCAGAAACTTACAGT 26990 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || || |||| ||||||| | ||| | || || || ||||| | || Sbjct 26991 TTGTTGATTGATAATTATATAAAGGATGAAAAGGAGCGATTAAATTTATTTCACGCAATA 27050 Query 269057 AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC 269116 || ||| ||| | ||| ||| || |||||| |||||||| || ||| | Sbjct 27051 GAAAATATACCAGCTGTTAAAAATAAAGCTTTGTGGGCTGCCAAATGGATTAATAATACC 27110 Query 269117 GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGG 269176 ||| | |||| || |||| || ||| ||||||||||||||| ||| || Sbjct 27111 AATTCTTTTGCAGAACGGATAGTAGCAAATGCATGTGTAGAAGGTATATTGTTTAGTGGT 27170 Query 269177 TCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA-GGATTAACTTTCTC 269235 |||| ||||| || ||||| || |||| | || || || ||||||| Sbjct 27171 AGTTTTTGTGCTATTTTCTGGTTTAA-AAAACAAAATAAATTACATGGGCTAACTTTTAG 27229 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 ||| ||||| || || || || ||||| ||||| ||||| |||||| ||| || Sbjct 27230 TAATGAATTAATTAGTAGAGATGAAGGATTACATACAGACTTTAACTGTTTAATATATA 27288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384341065724