Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq761 242 4e-59 seq306 154 2e-32 >seq761 Length=50680 Score = 242 bits (268), Expect = 4e-59 Identities = 482/711 (68%), Gaps = 21/711 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||||| | ||||| ||||||| | || || Sbjct 42498 AATTTTAATTTTGAAGAATTAGGTATAGGTGCATTAGATGAAGAATTTAAGATAATCTTT 42439 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | ||||| |||| | ||| | | || |||||| ||||||| ||| Sbjct 42438 AGAAGAACCTTTGCAAGTAGAATATATCCAAATTATATTATAAAACAATTAGGTATAAAA 42379 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || |||||| ||||| ||||||| || ||| || ||||| || || ||| || Sbjct 42378 CATGTGAAGGGAATTATATTATATGGACCACCAGGTACTGGAAAAACTTTGATTGCTAGA 42319 Query 164572 TGCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | || | || || ||| || || ||||||| |||||||||| ||| ||| Sbjct 42318 CAGATAGGAAAAACGTTAAATGCTCGAGAACC--TAAAATTATTAATGGTCCAGAAATAT 42261 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || ||||||||||| | || |||| ||| || |||| || ||| | || |||||| Sbjct 42260 TAAATAAATATGTAGGACAATCTGAAGAAAATATTCGAAATTTATTTAAAGATGCTGAAT 42201 Query 164690 AAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATA 164748 |||| | ||| |||| | | | || |||||| | || | || ||||| ||| Sbjct 42200 TAGAATATAAACAAAGTGGAGAAAATTCGTTG-TTACATATAATAATATTAGATGAAATA 42142 Query 164749 GATGCTCTTTGCAAAAAACGTGGTGATAATATTA-------TTCATGATGCAGTG----- 164796 ||||| | || ||| || | || || | || | || || || || Sbjct 42141 GATGCAATATGTAAACAAAGGGGGAATGCTTTTTCAAGTGGTACAGGAGTCAATGATAGT 42082 Query 164797 ---GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 ||||||||||| | |||||||| ||||||||| | ||||||||||||||| | Sbjct 42081 ATAGTTAATCAGTTATTATCTAAAATTGATGGTGTAAATAGTTTAAATAATATTTTATTA 42022 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | || ||||| || || ||||||||||||||| ||||||||| |||| ||| | || Sbjct 42021 ATTGGGATGACAAATAGAATTGATTTAATTGATGAAGCTTTATTAAGACCAGGTAGGTTT 41962 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||||| | ||||||||| |||| | || ||||| | ||||||| || || || Sbjct 41961 GAATTACATATAGAAATATCTCTACCTAATAAGGAAGGTAGGGTTCAAATATTGAATATT 41902 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 ||| || |||| | | || ||| |||| ||||||||| || || | || || Sbjct 41901 CATACAAAAAATATGAGAAACAGTAATAAATTAAGTCCCGATGTTAATATAGAAGAATTA 41842 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 || | |||| |||| | || || ||| | || ||||||||| || Sbjct 41841 GCCGAGAAAACCCCTAATTTTTCAGGAGCAGAAATTGAAGGATTAGTACGA 41791 >seq306 Length=50732 Score = 154 bits (170), Expect = 2e-32 Identities = 294/425 (69%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 6806 TTAATTGTTCTTTTATAGCTTTTA-TATGATCTAAATAAATATGAGCATCTCCTAGCGTA 6864 |||| ||| |||||| |||| | | |||||| ||||| ||| |||| ||||| || Sbjct 47290 TTAACTGTACTTTTA-AGCTGTCAATATGATTATTATAAACATGTGCATTTCCTAAAATA 47348 Query 6865 TGAATAAATTCACCTGGTTTCATATCA-ACAGCTTGAGCAATTAAATATGTTAATAATGC 6923 || || || | | || | | || | ||| |||| ||||| | || || |||| || Sbjct 47349 TGTATGAACTGTGCAGGCTGTAAATTACACA-CTTGTGCAATCATATGAGTGAATATTGA 47407 Query 6924 ATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG 6983 ||| || || | ||||||||| || ||||| || | ||| ||| |||||||| ||| Sbjct 47408 ATAGGAGGCAATATTAAAAGGGACTCCTAAACCTAAATCACATGACCTTTGATA-CATAA 47466 Query 6984 -ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAA 7042 ||| ||||| | || | | |||||||||| || || | |||||| ||||||| Sbjct 47467 TACATGATAATTTTCCATCAAAAACATAAAATTGGCATAAAATATGACAAGGAGGTAGTG 47526 Query 7043 CAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGAT 7102 | ||||| | ||| |||||| ||| || | ||| | |||| | |||||| Sbjct 47527 CCATTTGATCAAGATCTTTAACATTCCATGCACACAAAATAATTCTTCTACTAGTTGGAT 47586 Query 7103 TTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAG 7162 |||||| | ||||| ||| ||||||||| | || | | ||||||| || | Sbjct 47587 CATTTTTTATTAAATGGATAATATTTTTTAATTGATCAACTCCTTTATCTTCATAGTTGG 47646 Query 7163 TATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTA 7222 ||| |||| |||| | ||| || ||||| ||||||||||| ||||| ||||| |||| Sbjct 47647 CATGCATATTTGTATATTCAGCACCGAAATGCCTCCATTGAAAACCATATATAGGTCCTA 47706 Query 7223 AATCA 7227 | ||| Sbjct 47707 AGTCA 47711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595864901674800