Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq60 138 1e-27 seq124 129 5e-25 >seq60 Length=41302 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||||||||| |||||||| | || || || | || | ||| || Sbjct 6142 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCT 6083 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||||||||| |||| |||| |||||| || ||||| ||||| || || || || | | Sbjct 6082 AGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGA 6023 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||||||||| || | | |||||||| | ||||| |||| ||| ||||||||| Sbjct 6022 ATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTT 5963 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||||||| || || || ||||| Sbjct 5962 CCCGTTAGAGTTTTTACGAAAATTTGCAT 5934 >seq124 Length=28153 Score = 129 bits (142), Expect = 5e-25 Identities = 182/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || |||||||| |||| || || ||||| ||||| || Sbjct 11512 TAATGTTTTTACAAAGATTTGCATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGA 11571 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 || ||||| | ||| || || | ||| |||| | ||| || | |||||||| || Sbjct 11572 CTCTTTTTGAATGTTGTAGTC--TGATAATGTTCTACCATCTTCTAATTGTTTTCCTGCA 11629 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || |||||||| || ||||| || ||||| ||||| ||||| | |||||||||||| || Sbjct 11630 AATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACA 11689 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | || || | | || || |||| || || |||||||| || | ||||| Sbjct 11690 TTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTT 11749 Query 94994 ACAAAGATCTGCAT 95007 |||||||| ||||| Sbjct 11750 ACAAAGATTTGCAT 11763 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || |||||||| |||| || || ||||| ||||| || Sbjct 11740 TAATGTTTTTACAAAGATTTGCATACCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGA 11799 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 || ||||| | ||| ||||| || || | ||| || | |||||||| |||| Sbjct 11800 CTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAA 11859 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 |||||||| || ||||| || ||||| ||||| || || | |||||||||||| || Sbjct 11860 TATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATT 11919 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | ||| || | | || || |||| || || |||||||| Sbjct 11920 CTCAATAGTATCCGATGGTTCAACATCAAGAGTTATAGTTTTTCC 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285859731080