Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq27 333 3e-86 seq392 168 8e-37 >seq27 Length=5678 Score = 333 bits (368), Expect = 3e-86 Identities = 1101/1698 (65%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 || ||||| || |||||| || |||||||| | || || |||||||| |||||| Sbjct 678 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 737 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGAT 62252 || | ||||| || | | ||| | ||| | || | | || ||| ||| | | Sbjct 738 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 797 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 ||| || || || | | | || || || || | |||||| || ||| || | Sbjct 798 CCATTATGCGCAATTAACTGCTGTTTCATATCTTCGTCCCATAAGCCCCTATCGAATAGA 857 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 || | | | ||| || ||||| || |||||||||| ||| ||||| | | ||| Sbjct 858 TCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAA 917 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 || ||||| ||||| ||||| | || || ||||| || | ||||||| || || ||| Sbjct 918 ATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCA 977 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62492 || ||||||||||| | | |||| ||| || | ||| | | | | ||||| ||| Sbjct 978 GTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTT 1037 Query 62493 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT-----TGTA 62547 || ||||||||||| | | || | | | | |||| Sbjct 1038 AGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTA 1095 Query 62548 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 ||||||| | ||| || | || | ||| ||| | || || ||||| | || ||| Sbjct 1096 GAATACCTTGACTAGCTGGACTACCCTG-ATAAGATTCATAAGGTCCATGAATCATTGCT 1154 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGA-TCTTCTTATTTAG 62665 | ||| | | ||||| ||| | || || ||||||||||| | ||||| |||| | Sbjct 1155 AATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTC-TATTCAA 1213 Query 62666 ATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62724 |||| |||| || | | ||| | ||||| | || || ||||| | || ||||| | Sbjct 1214 CTCTTTAGCTT-CATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACC 1272 Query 62725 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62784 | |||||||| ||||| ||||||||||| ||||| ||||| | || |||||| ||||| Sbjct 1273 CCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAG 1332 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62844 | |||||||| | || || ||||||| |||||||| ||| | ||| | || | Sbjct 1333 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1392 Query 62845 TCAGTTTGAGAAAATCAAATCGCCCATCTATT--------ACAAACATGTTCAAGGCAAC 62896 | ||| ||||| |||| | | | || ||||| || || |||| Sbjct 1393 ATAATTTTTTAAAATTAAAT--TCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCAAT 1450 Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || |||||||| || || || |||| || | ||| | || || ||| || Sbjct 1451 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1510 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 | ||||||||| |||||||| |||| ||||| |||||| || ||||| | || Sbjct 1511 TAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAGTC 1570 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||||| | || ||||| ||| |||||||| ||| || || || || ||| | Sbjct 1571 TTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 1630 Query 63077 GACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAA 63133 || | || || || || ||| | | | ||||| ||| || ||| || Sbjct 1631 ATCTTGTGC---TAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATATAA 1687 Query 63134 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 63193 | ||| || || || ||||| | | ||| || ||||||| |||||||| || Sbjct 1688 TTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATTAA 1747 Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 | ||| | | | || || |||| |||||| || | ||||||| ||||| ||| Sbjct 1748 AGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCATA 1807 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||| | |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 1808 AAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAATTC 1867 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | ||||| |||||||| ||||| | || | || | | || | ||| ||| Sbjct 1868 GAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCTCC 1927 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||| ||||||| |||||||| || | |||| ||||||| ||||| || | | || || Sbjct 1928 TCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCATT 1987 Query 63434 TGATATACCATTGGTACCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 63492 ||| || ||||| ||||| ||||| | | | | | |||| | || || Sbjct 1988 TGAAATTCCATTCGTACCTCTAATATACGAATTTTGT-CCTCTTATATCTTGTACTGCTA 2046 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||||| || || || ||||| || | || || |||||| || || | |||| Sbjct 2047 CACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAATATAC 2106 Query 63553 CCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 | ||||| ||| |||| | ||| |||||||| ||||||||| | | | | Sbjct 2107 CTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGTCTAGGA 2165 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || | ||||||||| || || | ||| || || || |||||| ||| | | || Sbjct 2166 GTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAATGA 2225 Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | ||| |||||||| || | ||| || |||| | || | |||||| Sbjct 2226 TAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCATTAA 2284 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 | || || |||||||||| || |||||||| || || || || ||| |||| || Sbjct 2285 TAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTCTAA 2344 Query 63791 AGTTTTAAAACCAAAATA 63808 || ||||| |||||||| Sbjct 2345 TGTCTTAAATCCAAAATA 2362 >seq392 Length=30882 Score = 168 bits (186), Expect = 8e-37 Identities = 268/380 (71%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || |||||| || || ||||| ||| || || ||||||| || | | Sbjct 27100 ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTGA 27041 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || | || | || || ||| || | |||| |||| ||||| | ||| || || Sbjct 27040 AATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACTGTAAGTT 26981 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT-AGCCTCGGTAAT 33659 || |||||||| || || | || || ||||| || ||| ||| ||| || || || Sbjct 26980 TCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAGCTTCCGTTAT 26922 Query 33660 CTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 || |||||| | ||||| || | ||||||||||| |||||||| ||||| ||| Sbjct 26921 TTGAACTTCTCTTAAAAAT--TTACTAGCCAAATTTTCTAAAACTATTCCATCACTTGCT 26864 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 |||||||| || || |||||||||||||||| |||||| | | ||| ||| | || Sbjct 26863 GCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAA 26804 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || || | ||| | |||| ||||| ||||| ||||||||||||| || ||||| ||| Sbjct 26803 TCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTT 26744 Query 33838 TTATACATGTTCCAGATGTC 33857 ||||| | || ||| | ||| Sbjct 26743 TTATAAAAGTCCCATACGTC 26724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939779141480