Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq124 132 4e-26 seq27 87.8 2e-12 >seq124 Length=28153 Score = 132 bits (146), Expect = 4e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||||||||| |||||| | || || | || || ||| ||| | Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAG-CCATC 11705 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 11704 AGATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTGATCA 11645 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||||| | || | | || || ||| | ||||||| |||| | | | | || || | Sbjct 11644 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAA-CATTATCAGACTACA 11586 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||| || || | || ||||| |||||||| |||||||| Sbjct 11585 ACATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||||||||| |||||| | || || | || || ||| ||| | Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAG-CCATC 11477 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || || ||||| ||||| || || || ||||| Sbjct 11476 AGATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCA 11417 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| | || | | || || ||| | ||||||| |||| | ||||| || Sbjct 11416 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAA 11357 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| || || | || ||||| |||||||| ||||| || Sbjct 11356 CATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGG 11309 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || ||| ||| || || ||||| || || || |||||| Sbjct 11931 GATACTATTGAGAATGTTAAGGCAAAAATTCAAGATAAGGAAGGAATTCCACCTGATCAA 11872 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | || | | || || ||| | ||||||| |||| | ||||| ||| Sbjct 11871 CAGAGATTAATATTTGCGGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11812 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| || || | || ||||| |||||||| |||||||| Sbjct 11811 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11765 >seq27 Length=5678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 661/1050 (63%), Gaps = 51/1050 (5%) Strand=Plus/Plus Query 132251 TTACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTC 132310 ||||||||| | || || || |||||||| || || | |||||||| ||| | || || Sbjct 921 TTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGTT 980 Query 132311 GGCATGTAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGC 132370 ||||| |||| | ||| ||||| | | || ||| | |||| | || || Sbjct 981 GGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTTAGT 1040 Query 132371 TCGTCCCAGTTCCACAGATCATTCGATTGAGAGAT--ATTCCACAAATCAAACTGTAAAT 132428 || ||||| ||||| | | | | || | | |||||||| |||||| |||| | Sbjct 1041 TCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGTAGAA 1098 Query 132429 GACCGCTACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTT 132488 ||| ||| || ||| || | |||||| || || | ||| || | | || | || Sbjct 1099 TACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCATTGCTAATT 1158 Query 132489 CTATGCTC-TGACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCC 132547 | || | | || | | || |||| || || || || | ||| |||||||||| || Sbjct 1159 CCATAGACATTTCTAAAG-CAGCATAGTACATGGTTTCGAATATTCTTCTATTCAACTCT 1217 Query 132548 CTTGCTTGTT--GACTGTCGTAGGGCAAATTTAAAATAGCG--AACGCATCGGCAAGTCC 132603 | |||| | |||| | ||||| | || | ||| ||| || | ||| || | || Sbjct 1218 TTAGCTTCATCCGACT--CATAGGG-ATATCTCAAA-AGCATAAAAGTATCTGCTAACCC 1273 Query 132604 CTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGG 132663 ||||| || ||||| || |||||||| | || || |||| || | | || Sbjct 1274 CTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTAATAGG 1333 Query 132664 ATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATA 132723 ||| | ||| | || |||||||||| ||||| |||| | || | | | | || ||| Sbjct 1334 GTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCATA 1393 Query 132724 TAGCGATTCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTG---ACGGCAAT 132780 || || ||| | ||| | ||| | || | | | | | ||| | ||||| Sbjct 1394 TAATTTTTTAAAATTAAATTCTTTTTT---TTCCAAGTCCACAAATTTGCATAAAGCAAT 1450 Query 132781 CGAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACA 132840 || || | ||| ||||| || || | | |||||| | ||||| ||| Sbjct 1451 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1510 Query 132841 CAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTA-T 132899 |||||||| | ||| || | ||||||||||| ||| | || || | | | Sbjct 1511 TAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATT-ACATGAGT 1569 Query 132900 CTTTATGCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAA 132959 |||||| ||||| || ||| | || ||||| | ||| ||| |||| | Sbjct 1570 CTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTG--TAATAT--------- 1618 Query 132960 GATCTAACGCCAAAATTTGTTCTT-TAAACTT-----GCCCTGAGTCTCGTA-----ACT 133008 | | ||| ||| |||| || || | || |||| | | || | ||| Sbjct 1619 -AGCAAACCATAAATCTTGTGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACT 1677 Query 133009 TT-CGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 | | |||||| ||||||||||| || | || | | || || || || | | Sbjct 1678 TAACATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTG 1737 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 ||||||| || | ||| |||| | | | || |||||||||||||| ||| || Sbjct 1738 GACACATTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCC 1797 Query 133128 ACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAG 133186 | | ||| |||| ||||| | || ||| || ||||| ||| |||| | | || Sbjct 1798 AAACAGCATAAAACAAATCTCTTGCTCTTAAT-TCTTCTTTGCCATGATTTTTTCTTAAA 1856 Query 133187 TCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTC 133246 || ||||| || || |||| |||||| || || ||||| || || |||| ||||| Sbjct 1857 TCTAAAAATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTT 1916 Query 133247 CTTTT---ACCTCCCTGATCCACATGTCTA 133273 ||||| ||||| ||||| |||| |||| Sbjct 1917 CTTTTTCCTCCTCCTTGATCTACATATCTA 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931006427715