Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq60 93.3 4e-14 seq124 84.2 2e-11 >seq60 Length=41302 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||||||||| ||||| || | ||| | || |||||||| || ||| Sbjct 6130 GTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGTTTTCCT 6071 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TT 131156 || | |||| | || ||||| || || ||||| || || || ||| ||| ||| || Sbjct 6070 GCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCT-TGAATTTTTGCCTT 6012 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | ||| || | | |||| || | |||| |||||| || |||||||| Sbjct 6011 TACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGT 5952 Query 131217 TTTTACGAAAATCTGCAT 131234 |||||||||||| ||||| Sbjct 5951 TTTTACGAAAATTTGCAT 5934 >seq124 Length=28153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 ||||| |||| ||| ||||| ||||||||||||||||| || || | || ||| Sbjct 11327 ACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCT 11386 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || ||||| | ||||| | ||| || || || || |||||||| ||||| Sbjct 11387 AATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGT 11446 Query 131146 ATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTA 131205 ||||| ||| | | ||| | ||||| | | ||| | || | || | ||||| Sbjct 11447 ATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTTTTT 11506 Query 131206 CCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||| |||||||| || || ||||| Sbjct 11507 CCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 ||||| |||| || ||||| |||||||||||||| || | | ||| | | | || || Sbjct 11555 ACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACCA-TCTTC 11613 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || ||||| | ||||| | ||| || || || || |||||||| ||||| | Sbjct 11614 TAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTC-TT 11672 Query 131145 GATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| || ||| | | ||| | ||||| | | ||| | || | || | |||| Sbjct 11673 GAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGTTT 11732 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || |||| |||||||| || || ||||| Sbjct 11733 TTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007177147520