Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq124 147 2e-30 seq60 105 6e-18 >seq124 Length=28153 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || || || || ||| | || ||| | || || ||| | || Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| |||||| ||| ||||| ||||| ||||||||||| || Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAA-GACAAGGAAGGAATTCCACCTGATCA 11645 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| || |||||||||||||||| | | || | || ||||| Sbjct 11644 ACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTACAA 11585 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| ||||| |||| ||||| |||| |||||||||| Sbjct 11584 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || || || || ||| | || || | || || ||| | || Sbjct 11535 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACTCTTGATGTTGAGCCATCA 11476 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| ||||| ||||| ||||| ||||||||||| ||| Sbjct 11475 GATACCATTGAGAATGTTAAGGCTAAAATACAAGACAAGGAAGGAATTCCACCTGATCAA 11416 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || |||||||||||||||| | || || |||||||| Sbjct 11415 CAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAAC 11356 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || ||||| ||||| |||| ||||||| || Sbjct 11355 ATTCAAAAAGAGTCAACCCTACACTTAGTTTTAAGATTAAGAGGTGG 11309 Score = 118 bits (130), Expect = 9e-22 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 ||||||| ||| || || ||||| ||||||||||| |||||| | | || ||||| || Sbjct 11910 GCAAAAATTCAA-GATAAGGAAGGAATTCCACCTGATCAACAGAGATTAATATTTGCGGG 11852 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 |||||||||||||||| | || || |||||||| ||||||||||| ||||| | Sbjct 11851 AAAACAATTAGAAGATGGAAGAACATTGTCGGATTACAACATTCAAAAAGAGTCCACTTT 11792 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| |||| |||||||||| Sbjct 11791 ACACTTAGTCTTAAGATTAAGAGGAGG 11765 >seq60 Length=41302 Score = 105 bits (116), Expect = 6e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || ||||| ||| | || || ||| |||| || | || || || | Sbjct 5930 AAAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACC 5989 Query 25055 GTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||||| ||| | || ||||||| ||| || || || || |||||||| | Sbjct 5990 ATCTGACACTATTGAGAATGTAAAGGCAAAAATTCA-AGATAAGGAGGGAATTCCACCAG 6048 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| | | |||||||| || ||||| ||||||||| | || | || | Sbjct 6049 ACCAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACT 6108 Query 25174 ACAATATTCAAAAAGAATCCAC 25195 ||||||||||||| || || || Sbjct 6109 ACAATATTCAAAAGGAGTCTAC 6130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322967030695