Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq392 268 1e-66 >seq392 Length=30882 Score = 268 bits (296), Expect = 1e-66 Identities = 602/885 (68%), Gaps = 21/885 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| |||| || || || ||||| ||||||| || |||||||| ||||||| Sbjct 27581 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 27522 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||||||| ||| || | | | | ||||| || | | | || |||||| | | Sbjct 27521 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAA-AAGACTTTTGAGCATC 27463 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | || ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 27462 CTAAACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAAT 27403 Query 92967 TCATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 ||||||||| ||| | | ||||| || || | || ||| |||| | | | | Sbjct 27402 TCATTCCTATCAAGTCACA-AGGTAAAGATTCACATATAAATGATCGTTCT--ACTTCTA 27346 Query 93024 CGGCTTCTTTCAAGAT-TTCT-ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 | |||||||| | || |||| | | | | || | |||| ||| | | | | | | Sbjct 27345 CTGCTTCTTTTACAATATTCTGAACAATTT-CT-TCTGGTAATTTATTTTCCAGCAGACT 27288 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 || ||||| || |||||| |||||||| ||||| |||| || || ||||| || Sbjct 27287 ATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACT 27228 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 || |||| || |||| | |||| || | ||| || || | | ||||||||| Sbjct 27227 AAAAGTTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACC 27168 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | ||| ||||||||||| || |||| ||| || || ||||| |||||| || Sbjct 27167 ACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGT 27108 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 |||| | |||||||| |||||| ||||| || |||| | |||| |||| Sbjct 27107 ATTATTA---ATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 27051 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 || |||| ||||| | |||||| | ||| ||| || |||| || |||| Sbjct 27050 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAA 26991 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT-AG 93440 | || |||| ||||| | |||||||| ||| ||||| || || ||| ||| || Sbjct 26990 ACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATA-AAATTTCTTAG 26932 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACCA 93499 ||||||| || || |||||| ||||| | ||| | | |||||| ||||| ||| Sbjct 26931 CTTCCGTTATTTGAACTTCTCTTAAAAATTTA-CTAGCCAAATTTTCTAAAACTATTCCA 26873 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 || |||||||||||| || || | ||| |||||||||||||| |||| || || | Sbjct 26872 TCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAAT 26813 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || || |||| | ||| |||| | ||| | ||||| | |||||||| || ||| Sbjct 26812 TTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCT 26753 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||||||||| || | ||||||| |||| |||| ||||||| Sbjct 26752 TCTGCTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 26708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854166395720