Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq60 165 2e-35 seq124 161 2e-34 >seq60 Length=41302 Score = 165 bits (182), Expect = 2e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| | || ||||| ||||| || || || || || | || || |||||||| Sbjct 6143 TACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTC 6084 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || ||| || || || || || |||||||||||||| |||||||| || ||||| ||||| Sbjct 6083 TAGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTG 6024 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||||||| || ||| || ||||| | || ||| || || | || |||||||| Sbjct 6023 AATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTT 5964 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || || || ||||| || |||||| Sbjct 5963 TCCCGTTAGAGTTTTTACGAAAATTTGCATT 5933 >seq124 Length=28153 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| |||||||||||||| ||||| || || || | ||| || |||||| Sbjct 11552 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTACCATCT 11611 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || ||||| | ||| ||||| || |||||||| |||||||||||| Sbjct 11612 TCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCT 11671 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| |||||||| || ||| ||||| |||| || || || || | || || ||| Sbjct 11672 TGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGTT 11731 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || || ||||| Sbjct 11732 TTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || |||||||| || ||||||||||| ||||| ||||| || | ||| || |||||| Sbjct 11324 AAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCT 11383 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || ||||| | ||| ||||| || |||||||| |||||||||||| Sbjct 11384 TCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCT 11443 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || ||||| || ||| ||||| |||| || || || || | || || ||| Sbjct 11444 TGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTT 11503 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || || ||||| Sbjct 11504 TTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 149 bits (164), Expect = 1e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| |||||||||||||| ||||| ||||| || | ||| || |||||| Sbjct 11780 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCT 11839 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || ||||| | ||| ||||| || |||||||| |||||||| ||| Sbjct 11840 TCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCT 11899 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| |||||||| || ||| || || || | || ||| || || | || || ||| Sbjct 11900 TGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCAACATCAAGAGTTATAGTT 11959 Query 68430 TTTCC 68434 ||||| Sbjct 11960 TTTCC 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611421173160