Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq60 111 1e-19 seq124 82.4 5e-11 >seq60 Length=41302 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| || | ||||| ||||||| ||||||||||| | || ||| | Sbjct 5931 AAAATGCAAATTTTCGTAAAAACTCTAACGGGAAAAACCATTACGCTTGATGTCGAACCA 5990 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || | ||| ||||||| ||||| ||||| | || | || Sbjct 5991 TCTGACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAGGGAATTCCACCAGAC 6050 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||||| || ||||| || ||||| ||||||||| || ||| | | || ||| Sbjct 6051 CAACAAAGACTAATTTTTGCAGGAAAACAGCTAGAAGATGGAAGAACCTTATCTGACTAC 6110 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 |||||||| ||||| |||||| | || ||||| || Sbjct 6111 AATATTCAAAAGGAGTCTACTTTGCACTTGGTAATA 6146 >seq124 Length=28153 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || ||||| || || | || || | || Sbjct 11763 ATGCAAATCTTTGTAAAAACATTAACAGGAAAAACAATAACACTTGATGTTGAGCCATCA 11704 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG---TGTACCTGTAAAC 21950 || || | | || ||||| ||||||| || || || || | ||||| | Sbjct 11703 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATTCCACCTG---AT 11647 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||| | || ||||| || |||||| |||||||| | ||| | | || ||| Sbjct 11646 CAACAGAGATTAATATTTGCAGGAAAACAATTAGAAGATGGTAGAACATTATCAGACTAC 11587 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || || ||| | || | || ||| | ||| ||||||| Sbjct 11586 AACATTCAAAAAGAGTCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 11537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358120640492362