Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq306 114 1e-20 >seq306 Length=50732 Score = 114 bits (126), Expect = 1e-20 Identities = 230/335 (69%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || || |||| ||||| ||| || | |||||| |||||| |||||||| ||||| ||| Sbjct 47379 ACTTGTGCAATCATATGAGTGAATATTGAATAGGAGGCAATATTAAAAGGGACTCCTAAA 47438 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 || | || | ||||| ||||||| ||| || | | || ||| ||||||||| Sbjct 47439 CCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCAAAAACATAAAAT 47498 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGA-CAAG-TCCGCCGGGTTCCACG 20423 || ||||| | ||||| || || || ||||| || |||| || ||||| | Sbjct 47499 TGGCATAAAATATGACAAGGAGGTAGTGCCAT--TTGATCAAGATCTTTAACATTCCATG 47556 Query 20424 CACACATAATGATTCTTCTA-TCGTGCGGATTATTTTTTATTAAATCCACAATGTACGAC 20482 |||||| ||| ||||||||| | || |||| |||||||||||||| | ||| | Sbjct 47557 CACACAAAATAATTCTTCTACTAGT-TGGATCATTTTTTATTAAATGGATAATATTTTTT 47615 Query 20483 AATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAG 20542 ||||| |||| || | || ||||| |||| | | || | || || || Sbjct 47616 AATTGATCAACTCCTTTATCTTCATAGTTGGCATGCATATTTGTATATTCAGCACCGAAA 47675 Query 20543 TGCCTCCACTGGAAACCGTAAACAGGTCCCAAATC 20577 |||||||| || ||||| || | |||||| || || Sbjct 47676 TGCCTCCATTGAAAACCATATATAGGTCCTAAGTC 47710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441367542146520