Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq60 95.1 3e-14 seq677 86.0 1e-11 seq124 84.2 5e-11 >seq60 Length=41302 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| ||||| | | || | ||| ||||||| ||||||||||| || Sbjct 6124 TCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGTTTTCCTGCAAAA 6065 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||||| ||| ||||| || ||||| || ||||| || || || || Sbjct 6064 ATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTTTACATTC 6005 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| || || ||||| || || || || || ||||| || ||| Sbjct 6004 TCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGTTTTTACG 5945 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 5944 AAAATTTGCATT 5933 >seq677 Length=19565 Score = 86.0 bits (94), Expect = 1e-11 Identities = 239/364 (66%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 72420 GCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCG 72479 || ||| ||||||| || | |||||| || ||| | | ||| |||||||| || Sbjct 3710 GCTTCTACGTCAGAATTATTTGGAAAGGTAAAAGCAGCTATTCAAGATGAAAATACGCCA 3651 Query 72480 TTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAAT 72539 ||||||||| | || || | | ||||||| ||||| || ||| || | |||| Sbjct 3650 TTTTATCCTGTATCACCATATGCTATTGCAAAATTGTATGCCCATTATATAACAATAAAT 3591 Query 72540 TACCGTGAGTCGTATAACATGTATGTATGCAACTCG-ATTTGTTTCAATCACGAGAGTCC 72598 || | || || ||||| |||| | | || | | | || | || ||||| || ||||| Sbjct 3590 TATAGGGAATCATATAATATGTTT-TGTGTGAATGGCATATTATTTAATCATGAAAGTCC 3532 Query 72599 CAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAA 72658 | ||||| | || || ||| | ||||| || | || | || | |||| || Sbjct 3531 AAGAAGAGGGGAAACATTTGTTACTAGGAAAATAACTAGGGGTATTGCAAGAATTTGTAA 3472 Query 72659 TGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGC 72718 ||| ||| | || | || ||||| ||| | | ||||||||||| |||| Sbjct 3471 AAATGTTCAAACAGTTATAACGTTAGGAAATATTGATACATACAGAGATTGGGGGCATGC 3412 Query 72719 GAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGT 72778 || ||||| ||| | || |||| || ||| | |||||||||| || || || | ||| Sbjct 3411 TAAAGATTATGTACATGCCATGTATTTAATGTTACAACAAGATAAACCTGACGATTTTGT 3352 Query 72779 GATT 72782 ||| Sbjct 3351 TATT 3348 >seq124 Length=28153 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | | || | ||| |||||||||||||||||||| || Sbjct 11345 TCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAT 11404 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | ||||||| | ||| |||||||| || || || ||||| || || || || Sbjct 11405 ATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTC 11464 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || || || || || || || | || || || Sbjct 11465 TCAATGGTATCTGATGGCTCAACATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACA 11524 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11525 AAGATTTGCAT 11535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || ||||| | | || | || |||||||||||||||||||| || Sbjct 11573 TCTTTTTGAATGTTGTAGTCTGATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAAT 11632 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | ||||||| | ||| |||||||| || || || ||||| || || || || Sbjct 11633 ATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTC 11692 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || || || || || || || | || || || Sbjct 11693 TCAATGGTATCTGATGGCTCAACATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACA 11752 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 11753 AAGATTTGCAT 11763 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | | || | ||| ||||||||||||||||| || || Sbjct 11801 TCTTTTTGAATGTTGTAATCCGACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAAT 11860 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | ||||||| | ||| |||||||| ||||| || ||||| || || || || Sbjct 11861 ATTAATCTCTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTC 11920 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || |||| ||| | ||| || || || || || || || || Sbjct 11921 TCAATAGTATCCGATGGTTCAACATCAAGAGTTATAGTTTTTCC 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639996051134