Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq60 113 5e-20 seq124 96.9 3e-15 >seq60 Length=41302 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || |||||||| ||||| || | | ||| | | ||||| ||||| || || Sbjct 6130 GTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGTTTTCCT 6071 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | || ||||| || |||||||| || || ||||| |||||| |||| Sbjct 6070 GCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTTT 6011 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || ||| | || || || | || | ||| || || || | |||| Sbjct 6010 ACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGTT 5951 Query 64427 TTTACGAAAATTTGCATTTT 64446 |||||||||||||||||||| Sbjct 5950 TTTACGAAAATTTGCATTTT 5931 >seq124 Length=28153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| || | || || |||||||||||||||||||| | | || | Sbjct 11318 AATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGACAATGTTCTT 11377 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| | || | | ||| || || || ||||||||||| Sbjct 11378 CCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCC 11437 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||||||||| ||| ||| ||| | ||||| | || || || | |||| Sbjct 11438 TTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGAGTT 11497 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || || |||||||| || |||||||| Sbjct 11498 ATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| || | || || ||||||||||||||||| |||| | || | Sbjct 11546 AATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGATAATGTTCTA 11605 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| | || | | ||| || || || ||||||||||| Sbjct 11606 CCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGAATTCCTTCC 11665 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| |||||| ||| ||| ||| | ||||| | || || || | ||| Sbjct 11666 TTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACATCAAGTGTT 11725 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || || |||||||| || |||||||| Sbjct 11726 ATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638847981320