Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq124 143 2e-29 seq60 102 6e-17 >seq124 Length=28153 Score = 143 bits (158), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||||||||| || ||||| || |||||||| |||||||||| | | Sbjct 11309 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAAT--CCG 11366 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | |||||||||||||| || || |||| || | |||||| || || Sbjct 11367 ACAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTG 11426 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| ||||| || ||| | || || ||||| || | Sbjct 11427 GAATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAA 11486 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || ||||| ||||| | ||||||||||| ||||||||| Sbjct 11487 CATCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCATA 11536 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||| || | || || |||||||| |||||||| || || Sbjct 11537 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTC--TG 11594 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| || || |||| || | |||||| || || Sbjct 11595 ATAATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTG 11654 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| |||||| || ||| | || || ||||| || | Sbjct 11655 GAATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAA 11714 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || ||||| ||||| | ||||||||||| ||||||||| Sbjct 11715 CATCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCATA 11764 Score = 107 bits (118), Expect = 1e-18 Identities = 149/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||| || | || || |||||||| |||||||||| | | Sbjct 11765 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAAT--CCG 11822 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | |||||||||||||| || || |||| || | |||||| || || Sbjct 11823 ACAATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTG 11882 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 ||||||||||||| || |||||| || ||| | || |||||||| | || ||| Sbjct 11883 GAATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATC-CGATGGTTCA 11941 Query 15127 ACGTCTAAGGTAATGGTTTTACCT 15150 || || | || || ||||| ||| Sbjct 11942 ACATCAAGAGTTATAGTTTTTCCT 11965 >seq60 Length=41302 Score = 102 bits (112), Expect = 6e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCC 15038 ||||| || ||||| || ||||| || | | || |||| | ||||||| ||||| || Sbjct 6130 GTAGACTCCTTTTGAATATTGTAGTCAGATAAGG-TTCTTCCATCTTCTAGCTGTTTTCC 6072 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 || | || | | |||||||| ||||||||| ||||| || |||||| || Sbjct 6071 TGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTT 6012 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 |||| | || ||||| || ||| || || | ||||||||||| || || ||||| Sbjct 6011 TACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGT 5952 Query 15159 TTTTACAAAAATTTGCATATTTG 15181 |||||| ||||||||||| |||| Sbjct 5951 TTTTACGAAAATTTGCATTTTTG 5929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357387849003605