Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq944 652 0.0 seq470 389 3e-102 seq288 203 2e-46 seq27 168 5e-36 seq170 109 4e-18 seq9 109 4e-18 >seq944 Length=59512 Score = 652 bits (722), Expect = 0.0 Identities = 1130/1618 (70%), Gaps = 52/1618 (3%) Strand=Plus/Minus Query 517130 TTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGA 517189 || |||| | ||| || ||| | ||| || || || ||| ||| | ||||||| Sbjct 13188 TTATTCTCTTCATCCTCTGCTTTATATTTTTCTGCATCATTAACCATACGATCAATTT-- 13131 Query 517190 TCTTCAGAGAAT---CTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGT- 517245 |||||| | || || || || ||| ||||||||||||| || |||||| Sbjct 13130 -CTTCAGGGGATAACCTACCCTTATCATTGGTAATAGTAATATGATT----TTGTTTTCC 13076 Query 517246 --TGAT-TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 || | || ||| | || || ||||| | ||| ||||| ||||| | |||||| || || Sbjct 13075 CGTGCTCTTCTCAACAGCTGTAACATTTAAAATTCCATTTGCATCTATATCAAACGTAAC 13016 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 517362 ||||||||| || || || | |||||||| || || || |||| |||| | || | Sbjct 13015 TTCAATTTGTGGTACTTTCCTAGGGGCAGGTGGTATACCATCTAAATGAAATTTACCTAA 12956 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA-- 517420 |||||||||||| || ||| || ||| || || | | |||||| |||| ||| Sbjct 12955 CAAATTATTATCTTTTGTTAATGCTCTTTCTCCTTCATATACTTGGAT--TAAC-ACACC 12899 Query 517421 -GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTT 517479 | ||| ||||| | ||| || ||||| | | |||||| ||||| ||||| || Sbjct 12898 TGGTTGGTTATCAGCATACGTCGTAAAGATTTGACTTTTTTTTGCTGGAATAGTTGTATT 12839 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 ||| ||||| | || ||||||| |||||| || ||||||||||| | || | ||||| Sbjct 12838 TCTTTCAATCAATTTTGTCATAACACCACCAGCAGTTTCTAAACCTAAGGATA-AGGAGC 12780 Query 517540 G-ACATCAACTAGGACAATA--TTTTGAAGTTTTTCATCAGTTTGACCAACA-AGAATA- 517594 ||||| | || |||||| | ||||| ||| | ||| || | | |||| Sbjct 12779 ATACATCTAATA--ACAATAAATCTTGAACAG---CATTGGACTGATCACCCGATAATAT 12725 Query 517595 -GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 517653 |||||||| | || ||||||||||| ||||||||||| || |||| || | | | Sbjct 12724 TGCTGCTTGTACTGCTGCACCATATGCTACAGCTTCATCTGGGTTAATAGATCTACATGC 12665 Query 517654 TTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGAT 517711 || ||| || || ||||| | |||| | ||| || ||||||||| || | ||| Sbjct 12664 TTCTTTGCCGTTAAAAAATTCTTTGATTAATGTTTG--TATCTTAGGAATTCGTGTTGAA 12607 Query 517712 CCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACT 517771 || |||||||| |||| |||||| || | |||||||| | | ||| ||| ||| Sbjct 12606 CCACCAACTAAAACAACTTCATGTACACTTTTTTTATCCATCATAGCATCTTTTAAGACT 12547 Query 517772 TTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 517831 || || || ||| | | | || || |||| ||| | ||||| ||| | ||| Sbjct 12546 TTCTCTACTGGTACTAACGTATCCCTGAAATAGTCAATACATAACTCTTCAAATCTTGCT 12487 Query 517832 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 517891 ||| | | || ||| ||||||| || ||||| || | ||||||| ||| || |||| | Sbjct 12486 CTACTTACTGTTACACTATAATCTATACCTTCAAAAAGGGAATCAATTTCGATGGTAGCT 12427 Query 517892 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 517951 || || || || || | | |||||| || | ||||||| ||| |||| |||| ||| Sbjct 12426 TGTGTAGAGGATGACAACGTACGTTTGGCCCTTTCACATTGTGTTCTTAACCTTCTTAAT 12367 Query 517952 GCTTT--TGCTGATTGATTCAAATCTGTTT---TATATTTTCTCTTGAAATCTTCAACAC 518006 ||| | | | ||||| |||||| | ||| ||||||||| |||||||| |||| Sbjct 12366 GCTCTACTATTTTTTGAT--AAATCTTTACCCCTATTTTTTCTCTTAAAATCTTCTACAC 12309 Query 518007 ACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAG 518066 | | | || || | ||||||||||||||||| || || | |||| ||||| || | Sbjct 12308 AGAAATTAACTAGTCTGTTATCAAAATCTTCACCACCTAAGTGTGTATCTCCTGCTGTTG 12249 Query 518067 CTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCAC 518126 || | |||| ||| | |||||||||| | || | || ||||||| || || || | Sbjct 12248 CTTTCACTTCGAATATACCATCTTCAATTGTTAACAAAGATACATCAAATGTACCTCCTC 12189 Query 518127 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAA 518186 | | ||| ||||| | | ||| |||| | | ||||||| | |||||| || | Sbjct 12188 CTAAATCGAAAATTAAAATATTTTTTTCCCCCTTTCCTTTTTTATGTAAACCATATGCTA 12129 Query 518187 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 518246 || || ||||||||||||||||||||||||| ||||| | |||||||| | |||| Sbjct 12128 TTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCCAGCAATGGTACCTG 12069 Query 518247 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||||| || ||||||||||| ||||||||||||||||| || |||||||| || |||| Sbjct 12068 CATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTACAGTAATTACAGCAT 12009 Query 518307 CAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTG 518366 ||| |||||| | | | || ||| ||| |||||| || ||||| ||||| Sbjct 12008 TCTTTATGGATTTACCTAAAAATGCTTCTGCATTTTCTTTCATCTTTTGTAAAACCATTG 11949 Query 518367 ATGAAATTTGTTCTGG--GGAAT-ATTGCTTGGATTCATTTTGATATGATACTTCAAAAT 518423 ||||||||| ||| || | ||| ||| ||| ||| ||| |||| ||||||| Sbjct 11948 ATGAAATTTCTTCGGGATGAAATAATTTCTT---TTCCCCTTGGTATGTAACTTCAATCA 11892 Query 518424 ATGGTTTATTACCAACA--TTA-ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAA 518480 |||||| | | | ||| | | | ||| |||||||||| | |||||||| ||| | Sbjct 11891 TTGGTTTCTCATCTACACCTGACTTTACTGTAAATGGCCAATGCTTCATATCACTTTGCA 11832 Query 518481 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 518540 || | || |||| | || |||||||||| ||||||||||| | |||||| | Sbjct 11831 CAGATGATTCTGTAAATTTCCTTCCAATTAATCTCTTTGCATCAAATACAGTATTTTCCG 11772 Query 518541 GATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 518600 |||| | ||| |||| | || ||||||||||| || || ||||| || ||||| | Sbjct 11771 GATTCCTAGCAACTTGGTTCTTTGCTGCATCTCCTATTAGTCTCTCTGTATCAGTAAAGG 11712 Query 518601 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 518660 |||||| ||||| ||||| | ||| || ||||| || || ||||| || || || ||| Sbjct 11711 CAACATACGATGGGGTTGTTCTATTTCCCTGATCGTTTGCTATAATGTCCACGTTTTCAT 11652 Query 518661 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 518718 || ||||||||| ||||| | |||||||| || || |||||||| ||||| || Sbjct 11651 TTCTCCATACACCAACACATGAGTACGTTGTTCCCAAGTCGATACCAATGGCAATATT 11594 Score = 113 bits (124), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 322240 TAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACC 322299 |||||| ||||| | ||||||||||||||||||||||| ||| | | |||| || || Sbjct 12142 TAAACCATATGCTATTGCTGCTGCAGTTGGTTCATTAATAATTCTCATTACATTCAATCC 12083 Query 322300 CGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTAC 322359 ||||| || | | ||| ||||||||||| || | || ||||||||||||||||| Sbjct 12082 AGCAATGGTACCTGCATCTTTTGTTGCTTGTCTTTGAGAATCGTTAAAATATGCTGGTAC 12023 Query 322360 AGTAATAACTGCTTTATTAATAGGTTT 322386 |||||| || || || || || | ||| Sbjct 12022 AGTAATTACAGCATTCTTTATGGATTT 11996 >seq470 Length=33878 Score = 389 bits (430), Expect = 3e-102 Identities = 1100/1666 (66%), Gaps = 63/1666 (4%) Strand=Plus/Minus Query 517069 AACTGCTTGTTTAACACTGTGAGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGC 517128 ||||| | ||| | ||| || |||||| ||||| | |||||| || || || | Sbjct 25029 AACTGTTGCTTTCATACTTTGTAGATAATTGTCTAAATTATTTTTTGACTCCACTTTTTC 24970 Query 517129 TTTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTG 517188 | || || ||||| | || |||| | || ||| || ||||||| | || || || Sbjct 24969 TCTTAAATTTTTATCCTCGTCAGCAAACTTTTCAGCGTCGTTAATCATCTTTTCTATCTG 24910 Query 517189 ATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA 517248 || | || ||||| || || ||| ||||||||||| || || || ||| Sbjct 24909 TTCCTTTGATAATCTACCTTTATCATTGGTAATAGTAATTCCTTTAGACTTACCAGTTCC 24850 Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || | || |||| | |||||||| ||| | | ||||||||||||||| Sbjct 24849 TTTGTCTTCTGCTTCAACATGTAATATACCATTCTTATCAACAGTAAATGTGACTTCAAT 24790 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| || |||||||| || || || | |||| |||| | || Sbjct 24789 TTTTGGTACACCTCTTTGTGCAGGTGGAATACCAGATAATTCAAATTTTCCTAATAAATG 24730 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 ||||||||| || ||| |||||| || || |||| ||| || || | | ||| || Sbjct 24729 ATTATCTTTTGTTAATGCTCGTTCTCCTTCAAAAACTTGAATTAAGACAGCTGGTTGGTT 24670 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 517488 |||| |||||| | |||| | |||||||| || || ||| ||||| | ||| Sbjct 24669 ATCTTGATAAGTAGAAAATGTTTGTGATTTTTTTGTTGGTATAACTGTATTTCTTTTAAT 24610 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 517548 || | |||||||| ||||| | ||||| | ||| | || | ||||| ||||| | Sbjct 24609 AAGTTGAGTCATAATCCCACCAACAGTTTCAATACCTAAAGTCAATGGAGTTACATCTAA 24550 Query 517549 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 517608 || || | || ||| | || ||| || | || |||| ||||||| ||||| Sbjct 24549 TAAAACTACATCTTGTAATTCTTC---------TCCTAAAATAATACCTGCTTGGATAGC 24499 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 517668 ||||||||| || ||||||||||| ||||||| | |||| ||| ||||||||| || Sbjct 24498 AGCACCATAAGCTACAGCTTCATCTGGATTAATTCCTCTATTTGGTTCTTTACCATTAAA 24439 Query 517669 AAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 ||||| | || | |||| | ||||| ||||| | ||| || || ||||| || || Sbjct 24438 AAAATCTTTAATTATTTGTTGAATTTTAGGTATACGTGTTGAACCACCTACTAAGACTAT 24379 Query 517729 TTCATGCACCTGTGATTTATCCA-GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| | || | | ||| | || ||||| ||| ||| ||||||| ||| ||||| | Sbjct 24378 TTCGT-CAATTTTACTTTTTTCATATTTTGCATCATCTAATACTTTTTTAACTGGTTCTA 24320 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | ||||||| ||||| | | ||||| ||||| ||||| || | || | Sbjct 24319 AAGTTTCTCTAAATAAGTCATCATTTAACTCTTCAAATTTTGCTCTTGTTAATGTTTCTG 24260 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGA 517905 | ||| | || || | | | || | |||||| || |||| | ||| | ||| Sbjct 24259 AAAAATTATGACCCTCTATAATATCTTCTATTTCAATTTGAG-TTGAAT-GAACAACAGA 24202 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 || | ||| || ||| | || | |||| | || | | ||| | || || Sbjct 24201 TAAATTTCTTTTTGCTATTTCTACTTCTTTTCTTAATTTTTGAATAGCTCT--CTTATCA 24144 Query 517966 ATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 ||| | |||| |||| | || | || |||| || | | || | || || Sbjct 24143 GTTCTTAGATCTACATTAT-TCTTTTTTTTAAATATT-TTTATAAAATAATCCATTACCC 24086 Query 518024 TT--ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 || ||| |||||||| || || || | ||||| |||| || || ||||| ||||| Sbjct 24085 TTTGATCGAAATCTTCTCCACCTAAATGTGTATTACCTGCTGTTGCATATACTTCGAAAA 24026 Query 518082 GTCCATCTTCAAGAGACAA-AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 |||| |||| | |||| || | ||||||| ||||| ||||| | || | | Sbjct 24025 CACCATTATCAATA-ACAAGAATTGATACATCAAATGTTCCTCCACCTAAGTCGTATACT 23967 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | || | | || |||| || ||||| | |||||| || ||||||||||||||| Sbjct 23966 AATATACTAGTT------TCTTCCTTCTTATCTAAACCATATGCTAAAGCAGCAGCAGTT 23913 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||||||||| | | || ||| | |||||||||| ||||||| ||||| || ||| Sbjct 23912 GGTTCATTAATAATACGTACAATATTTAAACCAGCAATTGTTCCTGCGTCTTTTGTAGCT 23853 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 |||||||| | ||| ||||||||||| || || |||| || |||| | ||| ||| Sbjct 23852 TGTCTTTGAGCATCATTAAAATATGCTGGTACTGTAACTACTGCATTTTTAACTGGTTTT 23793 Query 518321 CCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 || || || | || || ||| |||||| || ||| | ||| | |||||||| Sbjct 23792 CC--TAAAAAGGATTGAGCTATTTCTTTCATCTTTTCTAATACCATAGCACTAATTTGTT 23735 Query 518379 CTGGGGAA----TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 518434 | || | | || | ||| || || || || |||| || || |||| || Sbjct 23734 CAGGTGCAAATGTAGTACTT---TTGTCCTTTATTTG-TACTCTAATATTTGGT---TTT 23682 Query 518435 CCAACATTAATAACT---TTAAATGGCCAGTATTTCATATCTGATTGAACACT--TTGGT 518489 || |||| | ||| | | | || | || | |||| || | ||| ||| | Sbjct 23681 CCTTCATTGTTCACTATGTCATAAGGTAATAATGTTCTATC--CTTTACTACTTCTTGAT 23624 Query 518490 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG 518549 ||| ||| | ||||| ||||||| ||| ||||||| | ||| | ||||| | | | Sbjct 23623 CATCAAATTTCCTACCTATTAATCTCTTTACATCAAACACAGTCTGTGTTGGGTGTAAAG 23564 Query 518550 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC----TCTGTAAATGAAACA 518605 ||||| | |||||||| || |||| | |||| || || ||| || ||| Sbjct 23563 TAGCTTCTAACTTGGCTGCTTCACCAA----CTTTTCTTTCCCCATCAACAAAAGATACA 23508 Query 518606 TATGATGGAGTTGTGCGATTACCTTGATCATT-CGCAATAATTTCAACTTTACCATTTTG 518664 || |||||||| | ||||||||| || || |||| ||||| ||| | ||||||| Sbjct 23507 TAGGATGGAGTAATACGATTACCTAACTCGTTATTCAAT-ATTTCCACTCTTCCATTTTT 23449 Query 518665 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 | ||||| ||||| ||| |||| ||||| | |||||| || ||| Sbjct 23448 GAACACACCAACACAGCTATAAGTCGTTCCCAGATCAATTCCTATA 23403 Score = 131 bits (144), Expect = 1e-24 Identities = 232/336 (69%), Gaps = 17/336 (5%) Strand=Plus/Minus Query 322059 TTAGAATATGATTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTATTACCAC 322118 ||| || || || ||||| | | || ||||||||||| || |||||||||||||| Sbjct 24106 TTATAAAATAATCCATTACCCTTTGATCGAAATCTTCTCCACCTAAATGTGTATTACCTG 24047 Query 322119 CTACTGCTAATG-TTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCTAAAGTC 322177 || ||| || ||| ||| || ||||| ||| | | || ||||| || || Sbjct 24046 CTGTTGCATATACTTCGAAA-ACACCATTATCAATAACAAGAATTGATACATCAAATGTT 23988 Query 322178 CCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCCATTTTTCACTT 322237 || | |||||||| || || | || || ||||| || ||| || || Sbjct 23987 CCTCCACCTAAGTCGTATACTAATAT------ACTAGTTTCTTCCTTC---TTATC---- 23941 Query 322238 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 322297 |||||| ||||| | ||| || ||||||||||||||||| || | || || |||| Sbjct 23940 --TAAACCATATGCTAAAGCAGCAGCAGTTGGTTCATTAATAATACGTACAATATTTAAA 23883 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || |||||| | | | || || |||||||| || || |||||||||||||||||| Sbjct 23882 CCAGCAATTGTTCCTGCGTCTTTTGTAGCTTGTCTTTGAGCATCATTAAAATATGCTGGT 23823 Query 322358 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAAA 322393 || |||| ||||| || |||| |||||| |||| Sbjct 23822 ACTGTAACTACTGCATTTTTAACTGGTTTTCCTAAA 23787 >seq288 Length=38684 Score = 203 bits (224), Expect = 2e-46 Identities = 830/1283 (65%), Gaps = 68/1283 (5%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCT-TGTT-ATCTGCTTCTTCAAA 517155 ||||| ||| ||||||||||| || ||||| | |||| |||| |||| | Sbjct 4989 TTTCTGCTTCGTTTTTAGAATCGGTT--AGATTTTTCTTGTGTTGATCTTTTTCTCTATT 5046 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATT 517215 | || ||||||| || ||| | ||||||| |||| | || | || | | | | Sbjct 5047 TAATTCAGCTTCTTGAACCATCTTTTCAATTTCTTCTTTACTCAAACCACCACTACTTTG 5106 Query 517216 AGTAATAGTAATATTCTTGGATTTG-TTTGTTGATTTATCAGCGGCAGTCACATTAAGAA 517274 | |||||||| || ||| ||| ||||| ||||||| || | | |||| || Sbjct 5107 A---ATAGTAAT-TTGTTGTTTTTTATTTGTCATTTTATCAATAGCGGATATGTTAATAA 5162 Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 | |||| ||||| | ||| ||||| ||||||||||| || || ||||| | ||||||| Sbjct 5163 TTGCATTAGCATCAACATCGAATGTAACTTCAATTTGTGGAACACCTCTAGGTGCAGGTG 5222 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || | |||| ||| | || | | |||||||| ||| | || || ||| | Sbjct 5223 GAATACCAACTAAATCAAAAGAGCCTAACATTTTATTATCACTAGCCATTTCTCTTTCTC 5282 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 | | ||| || ||| ||||| ||||| ||||| | | || | ||||| | | Sbjct 5283 CTTGATAAACTTTAATACTAACTTGTGTTTGGTTATCGGCAGCTGTGGAAAATATTTGCG 5342 Query 517455 ATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTG 517514 |||| || || |||||||| ||||||| ||| | || || | | ||||||| | Sbjct 5343 ATTTCTTTGTTGGGATTGTTGTATTTCTATTAATTAATTTAGTAAATACACCACCTAAAG 5402 Query 517515 TTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCAT 517574 |||||| ||| | || | |||| | ||||| | || | | || || | |||| | Sbjct 5403 TTTCTATACCTAATGATAAAGGAATAACATCTAAAAGAAGTAAATCTTTTA---TTTC-T 5458 Query 517575 CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAG 517634 | ||| | || | || |||| ||||| ||||| | ||||| |||||||| | Sbjct 5459 CCTTTTAA--------AACACCTCCTTGTATAGCTGCACCTAAAGCAACTGCTTCATCTG 5510 Query 517635 GATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT--TAC 517692 | || ||| ||| | | || |||||||| |||| | | ||| ||| Sbjct 5511 GGTTCACACTTTTTGATGGGGAATT----TTGAAAAA-TTTGTTTTACTGTTTCTGATAC 5565 Query 517693 CTTAGGAATACGAGATGAT-CCTCCAACTAATACAATTTCATGCACCTGTGAT--TTATC 517749 ||| || || | | | || || |||||||| | ||||||| | | | || || | Sbjct 5566 CTTTGGCATTCTTG-TCATACCACCAACTAAGATTATTTCATTAA--TTTCATCCTTTTT 5622 Query 517750 CAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAAGACCCGCTCTA---AACAAGT 517805 | |||| ||| ||| || ||| ||| || |||| | | || | || |||| Sbjct 5623 AACATTTGCATCTT-TAATACATTTCTCACAAGGATCAATA---GTTCCATGTAATAAGT 5678 Query 517806 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA---------TCAA 517856 | ||| | |||||| |||||||||||||| | | | | || || || | Sbjct 5679 CATGACATAATTCTTCTAATTTAGCTCTAGTCA-ATTTAATTTGCAAATGTTTCGGTCCA 5737 Query 517857 TTCC--TTCGAACAAAGAA----TCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 || || | | || || | || || || |||||| ||| | |||| | Sbjct 5738 GTCTGATTAGCAGTAATAAATGGTAAATTTATTTC--AGTTTGTGTCTTACTTGATAATT 5795 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATTGATTC 517969 || |||||| ||| |||| |||| |||| |||| ||| || | ||| || Sbjct 5796 CAATTTTAGCTGTTTCTGCTGCTTCTCTTAATCTTTGTAAAGCTAATTTATCATTTTTT- 5854 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 ||||| | || | |||| |||| || ||| | | | || || || | | |||| Sbjct 5855 AAATCAATATTTTCTTTTTTCTTAAATTCTGATATAAAATATTCTAAAATTCTTTGATCA 5914 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 |||||||| ||||| || ||||| || || ||| |||||| || | || || Sbjct 5915 AAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACCTCCT 5974 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 || |||| || || |||| || ||||| || | ||| | | | || Sbjct 5975 AAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATAC---TGCA--- 6028 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 ||| | || | | |||| || | ||| | || |||||||| || |||||||| ||| Sbjct 6029 ATTACCTTTCCATCACTTTTTTCTAATCCAAATGCTAAAGCAGCTGCTGTTGGTTCGTTA 6088 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 |||||||| || |||| | ||| |||||| | ||||||||||| || ||||||||||| Sbjct 6089 ATAATTCTTAATACATCTAAACCTGCAATTTTACCTGCATCTTTTGTTGCTTGTCTTTGA 6148 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 ||||| ||||||||||| || || |||||||| || | | |||| | | || | |||| Sbjct 6149 GAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGATGCACTTTTCTTCCTAAATAA 6208 Query 518330 GCGCTTGCCGTTTGTTTCATTTT 518352 ||| |||| ||||||||| Sbjct 6209 TTTTCTGCAGTTTCTTTCATTTT 6231 Score = 145 bits (160), Expect = 6e-29 Identities = 207/295 (70%), Gaps = 21/295 (7%) Strand=Plus/Plus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 ||||||||||| ||||| || |||||||||| | |||| | | |||||| || Sbjct 5912 TCAAAATCTTCCCCTCCTAAGGATGTATTACCATTTGTTGCTTTTACTTCAAATACACCT 5971 Query 322145 TTTGAGATATTCATTAACGAAACATCTAAAGTCCCAGCTCCTAAGTCATAAAC---AATT 322201 | | || | | | || | ||| || || ||| ||||||||||||| || |||| Sbjct 5972 CCTAAAATTTCTAAAATAGATATATCAAATGTACCACCTCCTAAGTCATATACTGCAATT 6031 Query 322202 ACGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCT 322261 || || ||| || |||||| |||| || |||| | ||| ||| Sbjct 6032 ACCTTTCCATCACTTTTTT------------------CTAATCCAAATGCTAAAGCAGCT 6073 Query 322262 GCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGA 322321 || |||||||| ||||| ||| | | ||||||||||| ||||||||| | | ||| Sbjct 6074 GCTGTTGGTTCGTTAATAATTCTTAATACATCTAAACCTGCAATTTTACCTGCATCTTTT 6133 Query 322322 GTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTAT 322376 ||||||||||| || | |||||||||||||||||||| |||||||| |||| || Sbjct 6134 GTTGCTTGTCTTTGAGAATCATTAAAATATGCTGGTACTGTAATAACAGCTTGAT 6188 >seq27 Length=5678 Score = 168 bits (186), Expect = 5e-36 Identities = 1003/1572 (64%), Gaps = 83/1572 (5%) Strand=Plus/Minus Query 398859 CGTGATTATAATC-TAACCATTTTCGGATTCAGGACTCTAGAAAAATCTTATCTTAAAAG 398917 ||||||| |||| | | ||||| ||||| | ||| |||||| ||||||| | | | Sbjct 2380 CGTGATTTTAATTATGATTATTTT-GGATTTAAGACATTAGAAAGATCTTATTTATTACG 2322 Query 398918 AATCAACaaaaaaaTTGTTGAACGTCCTCAACACTTATTTATGAGAGTAGCTATTACACT 398977 || ||||| |||||| ||||| | || ||||| ||||| ||||||||| | || | Sbjct 2321 TATTAACAACAAAATTATTGAAAGACCACAACATTTATTAATGAGAGTATCGATAGGTAT 2262 Query 398978 CCATTACAGGAAAAATGATCTCGACAGGATATTTGAAACTTATAAATATTTATCTAAAGG 399037 ||| | ||||| | || | ||| ||||||||| | | | ||| || Sbjct 2261 ACAT------ATTGATGATATAGATAAAGCATTAGAAACTTATCATTTGATGTCTCAAAA 2208 Query 399038 ATATTTTACTCACGCAACACCTACATTATTTAATGCTGGTACAACACATGAACAACTTTC 399097 |||||| ||||| || ||||| |||||||||||| ||||||| | ||| | || Sbjct 2207 ATATTTCACTCATGCTACACCAACATTATTTAATTCTGGTACTCCTAGACCCCAAATGTC 2148 Query 399098 AAGTTGTTTTTTATTGGGTATTGGT---GATTCTCTTGAAGAAATCAGTGAATGTTGGAA 399154 ||||||| | || ||| ||||| | |||| || ||| || Sbjct 2147 GTCTTGTTTTCTTTTATCTATGAAATCAGATTCAATAGAAGGTATATTCGAAACACTAAA 2088 Query 399155 AGAATGTGCTTTAATCAGTAAACATGCAGGAGGAATTGGAATACATATGACTA-ATATTA 399213 | | |||||| | || |||||| || || || || || || | || | |||| | Sbjct 2087 ACAGTGTGCTCTTATTAGTAAAACAGCTGGTGGTATAGGTGTAGCAGT-ACAAGATATAA 2029 Query 399214 GAGTTGAAGGAGCATATAT---AGCTTCAACACAAGGAGAAGCAGGTGGTTTAAGAGTTT 399270 ||| || | ||||| || | | | | ||| || ||| | | | Sbjct 2028 GAGGACAAAATTCGTATATTAGAGGTACGA---ATGGAATTTCAAATGGACTCGTACCTA 1972 Query 399271 TGACTA---TTTTCAATGATATTTCAAGATACGCAAATCAAGGTGGT---AAACGACCCG 399324 || | |||| ||||||| | ||||| | | ||||||| || ||| || | Sbjct 1971 TGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGAGGAGGAAAAAGAAAAG 1912 Query 399325 GTTCTTTTGCTATTTTTATTGAACCGTGGCATGGAGACATATTCTTTTTTCTAGATCTCA 399384 ||||||||||| ||| ||||||||| |||||| ||| |||||| ||| ||||| | | Sbjct 1911 GTTCTTTTGCTGTTTATATTGAACCATGGCATTCAGATATATTCGAATTTTTAGATTTAA 1852 Query 399385 AGAAAAATACTGGAGCAGAAACAGAAAGAGCCAGAGATTTATTTTTGG--GTTTGATGAT 399442 |||||| ||| |||| | |||||| |||||||| |||| | ||||| | | Sbjct 1851 GAAAAAATCATGGCAAAGAAGAATTAAGAGCAAGAGATTTGTTTTATGCTGTTTG--GGT 1794 Query 399443 TAATGACATTTTCATGGAAAGAGTTTATAAAGACGATGTTTGGTCATTAATGTGTCCGTC 399502 | |||| | |||||| ||||||| | || | | |||| | ||||||||||| Sbjct 1793 TCCTGACTTGTTCATGAAAAGAGTAAAAGAAAATCAAAATTGGACTTTAATGTGTCCAAA 1734 Query 399503 TCAATGTCCTAATCTTCTCAATAAATACGGAGACGAATTCACCAAAGAATATCTTAAATA 399562 | |||| || || | | || || || ||||| ||| |||| |||| || Sbjct 1733 TGAATGCCCAGGACTAAGTGAAACATGGGGTGAAGAATTTGAAAAATTATATGTTAAGTA 1674 Query 399563 TGAAAGTGAAGGTATTTATTTGAAACAAA----TAAGAGCTATTGATTTATGGTT--CAA 399616 |||| ||| | | ||| | || ||| || ||| ||||||||||| | | Sbjct 1673 TGAA---GAA-GAAAATATGGGCAAAAAAACTGTATTAGCACAAGATTTATGGTTTGCTA 1618 Query 399617 GATTATGGAGTCCCAAATTGAGACAGGAGTTCC--GTATGTTATGTTCAAAGATGCGATT 399674 |||| ||| |||||||| ||||| ||||| |||||||| | ||||| | | Sbjct 1617 TATTACAAAGT--CAAATTGAAACAGGTGTTCCATATATGTTATAT--AAAGACTCATGT 1562 Query 399675 AATGACAAATCAAATCAAATTAATATTGGTGTTGTTAATGGTTCAAATTTATGTTGTGAA 399734 |||| ||||| ||||||| ||| | ||| | | || || ||||||||||||||| Sbjct 1561 AATGCTAAATCGAATCAAAAAAATCTAGGTACTATCAAATGTAGTAATTTATGTTGTGAA 1502 Query 399735 ATTGTGGAAGTATCCGACA-AAAATAATTTCTCAGTATGTAATTTATCATCAATT--TGT 399791 ||| | | ||||| | || || | | | ||||||||| | | || ||| | | Sbjct 1501 ATTATTG-AGTATACTTCACCTGATGAAGTTGCTGTATGTAATCTTGCTTCTATTGCTTT 1443 Query 399792 CTGCCGAGATTTGTTAAAATTATTGATGAAGTCCCAACTTTCAATTACCAAAAATTATTC 399851 ||| | |||||| | ||| ||| | || |||| ||||||||| Sbjct 1442 ATGC--AAATTTGTGGA----CTTG--GAAAAAAAAGAATTTAATTTTAAAAAATTATAT 1391 Query 399852 AAGATTAGTCGTATTCTCACTCGCAATCTCAATAATATTATTGACATTAATTTCTATCCT 399911 | |||| ||| | ||| | ||||| |||| || ||||| | |||| || ||| Sbjct 1390 GAAATTACAAAAATTATTACTAGAAATCTAGATAAAATAATTGAAAGAAATTATTACCCT 1331 Query 399912 CTCGATAAAACTCGGATTACCAATCTTCGTGATCGTCCTATTGGTATTGGAGTTCAGGGA 399971 | | || | | | || | || | ||||| ||||| || |||||||| Sbjct 1330 ATTAAAGAAGCCAAAGTGTCTAACAAGAGGCATAGACCTATAGGTATAGGTGTTCAGGGG 1271 Query 399972 TTAGCTGAT--GTATTTGCTATGTTTAAGA-CTCCTTTTGATTCGGAAATTGCTCGTGAT 400028 ||||| ||| | | |||| ||| ||| ||| | ||| ||||| ||| || Sbjct 1270 TTAGCAGATACTTTTATGCT---TTTGAGATATCCCTATGAGTCGGATGAAGCTAAAGAG 1214 Query 400029 CTCAATCGTAAAATTTTCGAAACAATTTATTATGGAGCTTTAACAGAATCCAATAAACTT 400088 | ||| | | ||| |||||||| || || |||| |||||| | || | || | Sbjct 1213 TTGAATAGAAGAATATTCGAAACCATGTACTATGCTGCTTTAGAAATGTCTATGGAATTA 1154 Query 400089 GCTAGAGAAT-TTGGTACATATCAAACTTATCAAGGAAGTCCTATTTCTCAAGGAAAATT 400147 || | || | ||| | ||| || ||||||| || ||||| | |||||| | | Sbjct 1153 GC-AATGATTCATGGACCTTATGAATCTTATCAGGGTAGTCCAGCTAGTCAAGGTATTCT 1095 Query 400148 CCAATTTGATCTTTGGAAT--TTCGATAAATCACAATTGAGCGGAATGTGGGATTGGGAA 400205 ||||||||| | |||||| | || || || | | ||||| |||||| ||| Sbjct 1094 ACAATTTGATATGTGGAATAAAAAGGTAGATAGTAAGT-ACTGGAAT-TGGGAT---GAA 1040 Query 400206 CTTTTGCGTCAAGAAATTTTAAATCATGGTGTTCGTAATAGTCTAGTTACAACCTG---- 400261 || || ||| |||| || |||||| | | ||| ||| |||| || || Sbjct 1039 CTAAAGC-TCA--AAATACGTAAACATGGTTTAAGGAAT--TCT--TTACTACTTGCACC 987 Query 400262 TATGCCAACTGCAAGTACTTCTCAAATTATGGGATGGAATGAATGTATTGAACCTTATAC 400321 |||||||||||| ||| |||||||| | || || |||| ||||||||||||| Sbjct 986 TATGCCAACTGCTTCTACATCTCAAATACTTGGGAATAACGAATCCTTTGAACCTTATAC 927 Query 400322 AGAAAATATTTATTCAAGAAGTACTATGGCTGGAGAATATTTTGTGATTAATAAACATCT 400381 || ||||||| ||||| | || |||||||| |||||| |||| ||| | Sbjct 926 TAGTAACATTTATTATAGAAGAGTTTTGAGTGGAGAATTTTTTGTCGTTAACCCTCATTT 867 Query 400382 CATAAAAGATCT 400393 |||||||||| Sbjct 866 GTTAAAAGATCT 855 >seq170 Length=19265 Score = 109 bits (120), Expect = 4e-18 Identities = 191/275 (69%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC-ATCT 518089 |||| || ||||| | || ||| ||| || |||||| ||| || ||| || |||| Sbjct 16005 AATCATCTCCTCCTAGATTGTTATCTCCAGATGTAGCTAATACCTG-AAAGGTATTATCT 16063 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 ||| | || | || ||||||| || || || || | ||| | | ||| | || Sbjct 16064 GCAATATCTAATACAGATACATCAAATGTACCTCCTCCTAGGTCATATACAAGAATCTTT 16123 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 |||| | |||| | ||||| | ||||| |||| ||| |||||||| ||||||||| Sbjct 16124 TGTTCTGTATCTT---TCTTATCTAATCCATATGCAAGAGCTGCAGCAGTAGGTTCATTA 16180 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 | ||||| | || | ||| || || || ||| ||| | | || | || ||| || Sbjct 16181 ACTATTCTTACTACCTCAAGCCCTGCTATCTGTCCAGCAATTGTGGTAGATTTTCTCTGA 16240 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||||| ||||| ||||||||||| |||||||| || Sbjct 16241 GAATCATTAAAGTATGCAGGAACTGTAATAACTGC 16275 >seq9 Length=147692 Score = 109 bits (120), Expect = 4e-18 Identities = 129/175 (74%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 || |||| ||||||||||||||| || |||||||||||| | || ||||||||||||||| Sbjct 29378 GTTGATTTTTCTTCTCCAAATATAGCCAAAGAAATGCATGTAGGTCATTTAAGATCAACT 29437 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGA-----AATGTGTGGACACGATGTTTATC 870917 || || ||||| ||| ||||| | || || | ||| | |||| | Sbjct 29438 ATAATAGGTGATAGTATATGTAGAATTTTCGAGTTTTTAAATGTTAATACGA-----AAA 29492 Query 870918 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATAT 870972 | || |||||| | |||||||||||||| ||||| || ||| |||| |||||| Sbjct 29493 GAATAAATCATATTGGTGATTGGGGAACACAATTTGGAATGATAATAAATTATAT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780775109000818