Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq60 100 2e-16 >seq60 Length=41302 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || ||||| || ||||| || | | ||| | |||| || Sbjct 6142 ACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCT 6083 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| ||||| ||||||| ||| |||||| | || | |||||||| || | Sbjct 6082 AGCTGTTTTCCTGCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGA 6023 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || || || || || || | ||| | || ||||| | || ||||||| Sbjct 6022 ATTTTTGCCTTTAC--ATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTT 5965 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 ||||||| ||||| || || || || ||||| || ||| Sbjct 5964 TTCCCGTTAGAGTTTTTACGAAAATTTGCATTTTTGTA 5927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629829482184