Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq408 111 2e-19 seq306 109 7e-19 >seq408 Length=28392 Score = 111 bits (122), Expect = 2e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 126942 AAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATG 127001 ||||||||||| ||||| || || ||||| | | |||||||||||| |||||||||| Sbjct 21031 AAAATTTTTATTGGTCCGACTTATTATCAAAGGTTAAAACATATGGTTGAAGATAAAATA 21090 Query 127002 CATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGTTC 127060 |||||||||||| || | |||| | |||||| |||||||||| || | || Sbjct 21091 CATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-CGTCAACCAACAGAAGGAAGATC 21149 Query 127061 CCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 127105 || |||||| || | ||||| |||||||||| ||||||||| Sbjct 21150 AAGAGATGGTGGTCTACGTTTTGGTGAAATGGAAAGAGATTGTAT 21194 >seq306 Length=50732 Score = 109 bits (120), Expect = 7e-19 Identities = 424/655 (65%), Gaps = 20/655 (3%) Strand=Plus/Minus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGT--TTACGC 104853 ||||| |||||| | || ||| | ||||| | |||||||| ||| || | ||| Sbjct 47907 AATTTAATTTAAATCAAT--ATTTT-CCATTATTAACAACAAAGAAATTATTCCTTAGAG 47851 Query 104854 CAATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAAC---TTGTT 104910 |||| | | |||| ||| | ||| | || | ||| ||||||| || ||||| Sbjct 47850 GAATAAT--TGAAGAGTTACTTTGGTTTATAAGAGGAGAAACAAATGGAAATACTTTGTT 47793 Query 104911 AAATGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTG 104970 |||| ||| || | | | ||||| | | ||||| || | | ||||| ||| | Sbjct 47792 AAATAAAAATG---TAAGAATATGGGAAGCAAATGGAACAAGAGAATTTTTGGATAACAG 47736 Query 104971 TGGATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA 105030 ||| | | || ||| ||| |||||||| || ||||| ||||||||||| || Sbjct 47735 AAAATTATTCCATAGAGAAGTTAATGACTTAGGACCTATATATGGTTTTCAATGGAGGCA 47676 Query 105031 TGCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAAT 105089 | || ||| |||||| | | | || || || ||||| | |||| | || |||| Sbjct 47675 TTTCGGTGCTGAATATA-CAAATATGCATGCCAACTATGAAGATAAAGGAGTTGATCAAT 47617 Query 105090 TAAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATA 105149 ||| | |||| | ||||||||| | || || ||||||| ||| | | Sbjct 47616 TAAAAAATATTATCCATTTAATAAAAAATGATCCAACTAGTAGAAGAATTATTTTGTGTG 47557 Query 105150 GTTGGAATGTGTCACAATTATCA-GATATGGCTCTTCCACCGTGTCATTGTTTGGTACAA 105208 |||||||| | | || | | | ||||| || || || |||||| ||| ||| Sbjct 47556 CATGGAATGT-TAAAGATCTTGATCAAATGGCACTACCTCCTTGTCATATTTTATGCCAA 47498 Query 105209 TTTTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTA 105268 ||||| || || || | ||| ||| |||||||||| || |||||| Sbjct 47497 TTTTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAAAGGTCATGTGATTTA 47441 Query 105269 GGATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAA 105328 || ||||| || || | |||||||| | ||||||| | || | | | || || Sbjct 47440 GGTTTAGGAGTCCCTTTTAATATTGCCTCCTATTCAATATTCACTCATATGATTGCACAA 47381 Query 105329 TGGTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCT 105388 ||||||| || || | | | || || |||| ||| ||| ||| ||||| ||| | Sbjct 47380 GTGTGTAATTTACAGCCTGCACAGTTCATACATATTTTAGGAAATGCACATGTTTATAAT 47321 Query 105389 AACCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCCAA 105443 || ||| ||||| |||||| | || ||||| || | ||| ||| ||||||||| Sbjct 47320 AATCATATTGACAGCTTAAAAGTACAGTTAAATAGGATACCCTACCCCTTCCCAA 47266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658395356771880