Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq27 466 2e-126 seq392 381 7e-101 >seq27 Length=5678 Score = 466 bits (516), Expect = 2e-126 Identities = 1273/1929 (66%), Gaps = 86/1929 (4%) Strand=Plus/Plus Query 47303 TTTTAAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATAT 47362 |||||| | |||||| ||||| | |||||||||| | ||||| | ||| || Sbjct 860 TTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATAAAT 919 Query 47363 ATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGT 47422 ||||| ||||| ||||| | ||||| ||||| |||| ||||||| || || || || Sbjct 920 GTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGCAGT 979 Query 47423 AGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNN 47482 ||||| | ||||| || ||| ||| |||| |||| ||| |||| | Sbjct 980 TGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTTTAG 1039 Query 47483 NNGTTTCCAATCCCAAAGATCTGATGGAACAAC------ATTCCAAAAATCATATTGAAG 47536 | ||||| ||| | || | | | || |||||| | |||| |||| || Sbjct 1040 TTCATCCCAATTCCA--GTACTTACT-ATCTACCTTTTTATTCCACATATCAAATTGTAG 1096 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAG 47596 ||| |||| ||| ||| ||| | ||| | || |||||| || | | | || | Sbjct 1097 AATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCATGAATCATTGCTAA 1156 Query 47597 TTC-ACA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGA 47654 ||| | | || | ||| || ||| ||| || || ||||| |||||| || | || | | Sbjct 1157 TTCCATAGACAT--TTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCTATTCA-A 1213 Query 47655 TTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCC 47713 || || ||||| || ||| | ||||| || |||||||| || || Sbjct 1214 CTCTTTAGCTTCATCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCTAACCC 1273 Query 47714 TTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAAT-G 47772 |||||||| ||||| || |||||||| | || ||||| | | |||||| |||| | Sbjct 1274 CTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTT-TAATAG 1332 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 | || | ||| | || || ||||||| |||| |||||| Sbjct 1333 GGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATTTCAT 1392 Query 47833 TTAATTTATTAAAATCAAACT-TGTTATTTATAA-----CAAACCT--ATTAAGTGCTAT 47884 |||||| ||||||| ||| | | || ||| || |||| | || ||| | || Sbjct 1393 ATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAG--CAAT 1450 Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACA 47944 ||| || |||||||||||||| || |||| || |||||| | || |||||| ||| Sbjct 1451 AGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAACA 1510 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCG 48002 || ||||| ||||||||||||||| | ||||| ||||| ||| | |||||| | Sbjct 1511 TAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCAT--TACATGAG 1568 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || || || | |||| | || || ||||| || ||| || | |||| ||| Sbjct 1569 TCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCAT 1628 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTATAT 48119 | | || | | ||| ||| | | | |||| || | ||| || ||| |||| Sbjct 1629 AAAT--CTTGTGCTAATA-CAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACATAT 1685 Query 48120 AACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATC 48179 || || |||||||| || || | | | || || || |||||||| |||||||| Sbjct 1686 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACATT 1745 Query 48180 AATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCT 48239 || | ||||| | || | ||||||||| |||| || | || || | ||||| ||| Sbjct 1746 AAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAGCA 1805 Query 48240 ATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 ||| ||||| || | ||||| |||||| |||||| ||| || | | || | ||| Sbjct 1806 TAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAAAT 1865 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || | |||||| | |||||||||||| | ||| | || | |||| || ||| Sbjct 1866 TCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTCCT 1925 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||||| |||||| || |||| ||| ||||||||||||| || || | ||| Sbjct 1926 CCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTCCA 1985 Query 48420 TTTGATATACCATTGGTTCCCGAAATATA---ACTTCCACTAGCTCTTATATTACTAATT 48476 ||||| || ||||| || || |||||| | || | ||||||||| | | Sbjct 1986 TTTGAAATTCCATTCGTACCTCTAATATACGAATTTTGTC---CTCTTATATCTTGTACT 2042 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | | |||||||||||| || ||||| || ||||||||| |||| || || || | Sbjct 2043 GCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGAAT 2102 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || |||||||| ||| | ||||| ||| ||||||||| |||||||| || | Sbjct 2103 ATACCTTCTATTGAATCTGATTTCATAGATAAAAGAAAACAAGACGACATTTGGGGTCTA 2162 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || ||||||||||||||||| | |||||| | || |||| | || | ||| Sbjct 2163 GGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATCAAA 2222 Query 48657 TTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCAT 48715 | ||| ||||| | | ||||||||| || | |||||||||||| ||||| | ||| Sbjct 2223 TGATAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATACTCTCAT 2281 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || ||| |||||||||| ||||||||| || || || | ||| ||| |||| Sbjct 2282 TAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGATCTTTC 2341 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGT-TATCATTAATAATTGATGA 48832 ||||| ||||| |||||||| | || | ||| ||| ||| || |||| | Sbjct 2342 TAATGTCTTAAATCCAAAATAATCATAATTAAAATCACGTGTATAAT---CAATTTCTTT 2398 Query 48833 ATTTATTCTTTCCTTATGTTTATATACTACATCCAT-TACATTTT---TTGATATAATTG 48888 ||| | || ||| |||| ||| || | || || ||| ||| | || || || | ||| Sbjct 2399 ATTCAATCGTTCTTTAT-TTTGTAAAATAAATTCATATACTTCTTTACTTATTAAACTTG 2457 Query 48889 -----ATTCCT--------------TGTAAAGA--TCTTCTACAACAT-CACTAAATAtt 48926 ||||| |||| | | ||||| | || | | ||| || Sbjct 2458 CTGGTCTTCCTCTTACATCTTTATATGTATATAATGCTTCTGCTACTTCCCCTATAT-CA 2516 Query 48927 ttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986 | | || | |||||| | |||| | | | ||||| |||||||| || | | ||||| Sbjct 2517 TCACTAGTATTTTTATGTAAATTATCTGTTGTAATTCTTGCAGCTAAAATTGAAAAATCT 2576 Query 48987 GGATGAATTGTTGTACATGTACTAGATATTTCT--GCTGCTAATATATCTAATTCTTTAG 49044 |||||| |||| | ||| || | | || ||| ||||||||| ||||||||| | Sbjct 2577 GGATGAGTTGTAG-CCATATA-TGCACATGTCTGAGCTGCTAATTCATCTAATTCACATG 2634 Query 49045 TAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATCTATAT 49104 | ||| || |||| || || | ||| ||| || || || ||||||||| | Sbjct 2635 TTTTTATTCCACTATACATACCATTAATTACTCCTTGTGTTACTCTTGCTGGATCTA-CT 2693 Query 49105 GATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACATTA 49164 || | || || ||||| ||||| ||| |||||| ||||| ||||||| || Sbjct 2694 AATTC--ATGAAGACCATATGATAATCTTTGTATTCTTTTCAAAATTTGATCAAACGATA 2751 Query 49165 TATTCTCTT 49173 ||| |||| Sbjct 2752 TATCTTCTT 2760 >seq392 Length=30882 Score = 381 bits (422), Expect = 7e-101 Identities = 617/871 (71%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| ||| ||| ||||| ||||||||||||||||| || ||||| |||||||| | Sbjct 27581 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 27522 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||||| | ||||| ||| ||| ||||||||| || | | | |||| | |||| Sbjct 27521 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCC 27462 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTT-CATCATATCAC 18832 ||| |||||| | | ||||| || ||||||| ||| ||| ||| ||| | ||| Sbjct 27461 TAAACATTCTAACAAT---CTATCAGCCACAAATTCAATGTAT-TGTGACATTA-ATCTT 27407 Query 18833 -AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 ||||||||||||| || | | ||||| | || | |||| | |||||| | | Sbjct 27406 GAATTCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCT 27347 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT-----AGAAGAT 18946 ||||| ||| || |||| ||| | ||||| | | | ||| || ||| Sbjct 27346 ACTGCTTCTTTTACAATATTCTGAACAATTTCTTC--TGGTAATTTATTTTCCAGCAGAC 27289 Query 18947 GTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCAT 19006 || | || ||||| ||| || ||||| ||| || |||||||| || ||||||| Sbjct 27288 ---TATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCAT 27232 Query 19007 TAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAA 19064 || ||| |||| ||| | | | | | || ||||| |||||||| |||| | ||| Sbjct 27231 TACTAAAAGTTAGCCCATGTA--ATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAA 27174 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 ||| ||| |||||||||||||| |||| || |||| | |||| || || Sbjct 27173 ACTACCACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAA-- 27116 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCAT 19184 | || |||||| ||||||||| ||||| ||| || ||||| ||| ||| || Sbjct 27115 -GAATTGGTATTATTAATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTAT 27057 Query 19185 TGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTAT 19244 | ||||| | | ||||| || | ||||| | | ||| || | ||| ||| || Sbjct 27056 ATTTTCTATTGCGTGAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAAT 26997 Query 19245 CAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACA 19304 ||| |||||||| |||||||||||||||| || | || || ||||| ||||| Sbjct 26996 CAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATT- 26938 Query 19305 TCTT-GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACT 19362 |||| ||||| ||||| || ||||| || ||||| || | | |||||||||| |||| Sbjct 26937 TCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAAAACT 26879 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct 26878 ATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCA 26819 Query 19423 GTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 ||||| | | |||| || | ||| | |||||||||| ||||| |||||||||| Sbjct 26818 TTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAAT 26759 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATA 19513 ||||| |||||||||||||| | || ||||| Sbjct 26758 GAAGCTTCTGCTTTTTTATAAAAGTCCCATA 26728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102103878920