Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq392 210 3e-49 >seq392 Length=30882 Score = 210 bits (232), Expect = 3e-49 Identities = 549/830 (66%), Gaps = 13/830 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||| ||| ||||| || |||||| | |||||||||||||||| ||||||| Sbjct 27581 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 27522 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || ||||| ||||| ||| ||| ||||| || || | | | | ||| Sbjct 27521 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCC 27462 Query 36992 TAATTCCTTCAGA-AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||| | ||| | | ||||| || |||||||| ||||||| |||||| | | | Sbjct 27461 TAAA-CATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAAT 27403 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || || || | | || | | || | |||| | ||||| | ||| | Sbjct 27402 TCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTG 27343 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | ||||| || ||||| || || |||||| | | || || | || | | Sbjct 27342 CTTCTTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATA 27283 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 |||||| ||| || |||||| |||||||||||||| || ||||||||| ||| | Sbjct 27282 TTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAG 27223 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 ||| || | | | | | |||||||| ||| || || || |||| ||| || Sbjct 27222 TTAGCCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAA 27163 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || |||||||| || |||| |||||| | ||| | |||| || | || Sbjct 27162 ACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAG---AATTGGTAT 27106 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | ||||||||| | ||| || || ||||||| | || |||| |||| Sbjct 27105 TATTAATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTG 27046 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTAAACT 37468 | | || | || || | || | | ||| |||||||| ||||||| | ||||| Sbjct 27045 CGTGAAATA--AATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCAACAAACT 26988 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || |||| || |||||||| || | ||||| |||||| |||||| | ||||||| Sbjct 26987 GTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTC 26928 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | || |||||| || | ||||| | |||| || ||||| |||||| |||||||| Sbjct 26927 CGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTCCATCACT 26868 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA--TAATTTT 37646 |||||||| || || | |||| ||||||||||||| |||||| ||| | ||||||| Sbjct 26867 TGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCAT--TTTCATTTAATTTT 26810 Query 37647 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | |||| || | ||| |||||||||| | || || | |||||||| Sbjct 26809 TCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAA 26760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592309744026120