Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq124 167 2e-36 seq60 131 1e-25 >seq124 Length=28153 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | ||||||||| || ||||| || |||||||| || |||||||| | Sbjct 11309 CCACCTCTTAATCTTAAAACTAAGTGTAGGGTTGACTCTTTTTGAATGTTGTAATCCGAC 11368 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || ||||| || ||||||||||| || | ||||||||| || ||| Sbjct 11369 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11428 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| ||||| || ||| | || | || || || | || || Sbjct 11429 ATTCCTTCCTTGTCTTGTATTTTAGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11488 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || ||||| ||||||||||| || ||||| Sbjct 11489 TCAAGAGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11535 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | ||| ||||| || | || || |||||||| || ||||| || | Sbjct 11537 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAGTCTGAT 11596 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || ||||| || ||||||||||| || | ||||||||| || ||| Sbjct 11597 AATGTTCTACCATCTTCTAATTGTTTTCCTGCAAATATTAATCTCTGTTGATCAGGTGGA 11656 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||||||| || ||| | || | || || || | || || Sbjct 11657 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTCTCAATGGTATCTGATGGCTCAACA 11716 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || ||||| ||||||||||| || ||||| Sbjct 11717 TCAAGTGTTATTGTTTTTCCTGTTAATGTTTTTACAAAGATTTGCAT 11763 Score = 145 bits (160), Expect = 6e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | ||| ||||| || | || || |||||||| || |||||||| | Sbjct 11765 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCCGAC 11824 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || ||||| || || |||||||| || | ||||||||| || ||| Sbjct 11825 AATGTTCTTCCATCTTCTAATTGTTTTCCCGCAAATATTAATCTCTGTTGATCAGGTGGA 11884 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| || ||| | || | ||| || || | ||| || Sbjct 11885 ATTCCTTCCTTATCTTGAATTTTTGCCTTAACATTCTCAATAGTATCCGATGGTTCAACA 11944 Query 101423 TCAAGAGTGACCGTTTTGCC 101442 |||||||| | ||||| || Sbjct 11945 TCAAGAGTTATAGTTTTTCC 11964 >seq60 Length=41302 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| || ||||| |||||||| || | | ||||| |||| || | || || ||| Sbjct 6130 GTAGACTCCTTTTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAGCTGTTTTCCT 6071 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | | ||||| || || ||||| || || ||||||||||||||| ||| Sbjct 6070 GCAAAAATTAGTCTTTGTTGGTCTGGTGGAATTCCCTCCTTATCTTGAATTTTTGCCTTT 6011 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | ||||||||| | ||| || ||||| || | ||||| || |||| |||| Sbjct 6010 ACATTCTCAATAGTGTCAGATGGTTCGACATCAAGCGTAATGGTTTTTCCCGTTAGAGTT 5951 Query 101453 TTTACAAATATCTGCAT 101469 ||||| || || ||||| Sbjct 5950 TTTACGAAAATTTGCAT 5934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273797350221